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Carg01805 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01805
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein IDA-like
Genome locationCarg_Chr04:9234970..9235236
RNA-Seq ExpressionCarg01805
SyntenyCarg01805
Gene Ontology termsGO:0010227 - floral organ abscission (biological process)
GO:0005615 - extracellular space (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR039639 - Protein IDA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034518.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]1.5e-2167.71Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+ N NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KAG6601330.1 Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3898.84Show/hide
Query:  SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDL NFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
Subjt:  SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KAG7032113.1 Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-40100Show/hide
Query:  MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
Subjt:  MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KGN52035.1 hypothetical protein Csa_008746 [Cucumis sativus]7.3e-2168.18Show/hide
Query:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+ N +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

TYK09072.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]1.5e-2167.71Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+ N NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

TrEMBL top hitse value%identityAlignment
A0A0A0KR07 Uncharacterized protein3.5e-2168.18Show/hide
Query:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+ N +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A540KUL5 Uncharacterized protein3.9e-1252.08Show/hide
Query:  SSSSSSSSSLSAIFVLLLL--LVSGFCSATRPGKTMGHELKPDLL-------NFN---YKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        SS S   SS   +FVLLL+  L++G C+ATR  KT+   L    L        FN   + TGFRY GQ FSY P+G PIPPSGPS+RHNS VDS P
Subjt:  SSSSSSSSSLSAIFVLLLL--LVSGFCSATRPGKTMGHELKPDLL-------NFN---YKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

A0A5A7SV51 Putative Membrane lipoprotein7.1e-2267.71Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+ N NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A5D3CCP4 Putative Membrane lipoprotein7.1e-2267.71Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+ N NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A5N5FKV5 Protein IDA-like5.1e-1251.04Show/hide
Query:  SSSSSSSSSLSAIFVLLLL--LVSGFCSATRPGKTMGHELKPDLL-------NFN---YKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        SS S   SS   +FV+LL+  L++G C+ATR  KT+   L   +L        FN   ++TGFRY GQ FSY P+G PIPPSGPS RHNS VDS P
Subjt:  SSSSSSSSSLSAIFVLLLL--LVSGFCSATRPGKTMGHELKPDLL-------NFN---YKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

SwissProt top hitse value%identityAlignment
Q8LAD7 Protein IDA1.1e-0847.89Show/hide
Query:  FVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+SLP
Subjt:  FVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

Arabidopsis top hitse value%identityAlignment
AT1G68765.1 Putative membrane lipoprotein8.0e-1047.89Show/hide
Query:  FVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+SLP
Subjt:  FVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

AT3G25655.1 inflorescence deficient in abscission (IDA)-like 18.6e-0429.63Show/hide
Query:  SSSSSLSAIFVLLLLLVSGFCSATR--PGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSL
        S  +    ++++ LL+   + +  R  P K    E+           GF + G+ F    + V +PPSGPS RHNS+V++L
Subjt:  SSSSSLSAIFVLLLLLVSGFCSATR--PGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGG
ACATGAGTTGAAACCCGACTTGTTGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCTAGAGGCGTCCCGATTCCTCCGTCAGGCC
CTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGG
ACATGAGTTGAAACCCGACTTGTTGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCTAGAGGCGTCCCGATTCCTCCGTCAGGCC
CTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA
Protein sequenceShow/hide protein sequence
MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS