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Carg01871 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01871
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr04:8880631..8881199
RNA-Seq ExpressionCarg01871
SyntenyCarg01871
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601256.1 Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. sororia]3.4e-5493.86Show/hide
Query:  MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKV
        MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDE    NQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLD KV
Subjt:  MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKV

Query:  VKNFALISGCLEVM
        VKNFALISGCLE +
Subjt:  VKNFALISGCLEVM

KAG7032048.1 hypothetical protein SDJN02_06090, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-72100Show/hide
Query:  MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKV
        MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKV
Subjt:  MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKV

Query:  VKNFALISGCLEVMSTGLCFQGFGSKKEPTIL
        VKNFALISGCLEVMSTGLCFQGFGSKKEPTIL
Subjt:  VKNFALISGCLEVMSTGLCFQGFGSKKEPTIL

XP_022150638.1 uncharacterized protein LOC111018723 [Momordica charantia]3.5e-2768.22Show/hide
Query:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLD----RKVVKNFALIS
        F +PS WRRRP +DHRRAPRCH GV D+    NQKDIVEANLTVL+ RMEDLRKKERRIP     G +E DN W Y S  DAKLD    RK+VKNFALIS
Subjt:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLD----RKVVKNFALIS

Query:  GCLEVMS
         CLEV+S
Subjt:  GCLEVMS

XP_038893300.1 uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]1.5e-3368.91Show/hide
Query:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRD-AKLDR----KVVKNFALIS
        F++P   RRRPSDHRRAPRCHGGVGDE    NQKDIV+ANLTVL+ARMEDLRKKERRIPLP R GG+E DNGWRY S  D AK DR    K++K FALI+
Subjt:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRD-AKLDR----KVVKNFALIS

Query:  GCLEVMST-----GLCFQG
        GCLEV++T     GL F G
Subjt:  GCLEVMST-----GLCFQG

XP_038893301.1 uncharacterized protein LOC120082131 isoform X2 [Benincasa hispida]2.1e-2479.73Show/hide
Query:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWR
        F++P   RRRPSDHRRAPRCHGGVGDE    NQKDIV+ANLTVL+ARMEDLRKKERRIPLP R GG+E DNGWR
Subjt:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWR

TrEMBL top hitse value%identityAlignment
A0A0A0KRA6 Uncharacterized protein1.1e-2158.97Show/hide
Query:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGV-EIDNGWRYRSTRDAK-LDRKVVKNFALISGC
        F+ PS  RRRP SDHR APRCHG  GDE    N+KDIVEANLTVL+ RMEDLRKKER IP+  R  G+ E+D+G RY    D    D K +KN  LISGC
Subjt:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGV-EIDNGWRYRSTRDAK-LDRKVVKNFALISGC

Query:  LEVMS-----TGLCFQG
        LEV+S      GL F G
Subjt:  LEVMS-----TGLCFQG

A0A1S3BFP0 uncharacterized protein LOC1034893335.6e-2357.98Show/hide
Query:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLP---KRLGGVEIDNGWRYRSTR--DAKLDRKVVKNFALIS
        F+ PS  +RRPSDH  APRCH   GDE    N+KDIVEANLTVL+ RMEDLRKKERRIP+P   ++ G  E D+G RY S++      D K +KN ALIS
Subjt:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLP---KRLGGVEIDNGWRYRSTR--DAKLDRKVVKNFALIS

Query:  GCLEVMST-----GLCFQG
        GCLEV+ST     GL F G
Subjt:  GCLEVMST-----GLCFQG

A0A5A7SXL4 Uncharacterized protein5.6e-2357.98Show/hide
Query:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLP---KRLGGVEIDNGWRYRSTR--DAKLDRKVVKNFALIS
        F+ PS  +RRPSDH  APRCH   GDE    N+KDIVEANLTVL+ RMEDLRKKERRIP+P   ++ G  E D+G RY S++      D K +KN ALIS
Subjt:  FYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLP---KRLGGVEIDNGWRYRSTR--DAKLDRKVVKNFALIS

Query:  GCLEVMST-----GLCFQG
        GCLEV+ST     GL F G
Subjt:  GCLEVMST-----GLCFQG

A0A6J1D9Z1 uncharacterized protein LOC1110187231.7e-2768.22Show/hide
Query:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLD----RKVVKNFALIS
        F +PS WRRRP +DHRRAPRCH GV D+    NQKDIVEANLTVL+ RMEDLRKKERRIP     G +E DN W Y S  DAKLD    RK+VKNFALIS
Subjt:  FYAPSPWRRRP-SDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLD----RKVVKNFALIS

Query:  GCLEVMS
         CLEV+S
Subjt:  GCLEVMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCATGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCATGGCGGCGT
CGGCGATGAAGGTCCTGGCCCGAACCAGAAGGACATCGTGGAAGCGAACTTGACGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTC
CGAAACGGCTCGGTGGAGTCGAAATCGATAATGGATGGAGGTATCGGTCGACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGC
TTGGAGGTGATGAGTACGGGCCTTTGTTTTCAAGGTTTTGGATCCAAAAAAGAGCCAACCATTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAAAATGGCTTCTGCACGTCTCTCGTCGTTCCGTTCTACGCTCCGTCTCCATGGCGGCGAAGGCCATCAGACCACCGTAGAGCTCCGAGATGCCATGGCGGCGT
CGGCGATGAAGGTCCTGGCCCGAACCAGAAGGACATCGTGGAAGCGAACTTGACGGTGTTGAAAGCGAGAATGGAGGATTTGAGGAAGAAAGAGCGGCGGATTCCGCTTC
CGAAACGGCTCGGTGGAGTCGAAATCGATAATGGATGGAGGTATCGGTCGACGAGGGACGCGAAGTTGGATCGCAAGGTTGTGAAGAATTTTGCCCTAATTTCAGGGTGC
TTGGAGGTGATGAGTACGGGCCTTTGTTTTCAAGGTTTTGGATCCAAAAAAGAGCCAACCATTTTATAA
Protein sequenceShow/hide protein sequence
MVQNGFCTSLVVPFYAPSPWRRRPSDHRRAPRCHGGVGDEGPGPNQKDIVEANLTVLKARMEDLRKKERRIPLPKRLGGVEIDNGWRYRSTRDAKLDRKVVKNFALISGC
LEVMSTGLCFQGFGSKKEPTIL