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Carg01899 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01899
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationCarg_Chr04:8729355..8731865
RNA-Seq ExpressionCarg01899
SyntenyCarg01899
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]9.5e-63100Show/hide
Query:  MFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHR
        MFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHR
Subjt:  MFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHR

Query:  QGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        QGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
Subjt:  QGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.2e-6799.3Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
        MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA

Query:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI HLHLVF
Subjt:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

XP_022987717.1 uncharacterized protein LOC111485159 [Cucurbita maxima]5.9e-6596.48Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
        MGRRREL+LMFLLFCSTIPAISSA QQQILPTE NYHQKTNAEKHG+DGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA

Query:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AGSAQAHHRQGR RNAGNHYENNMGLLVASVLAAIAHLHLVF
Subjt:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]7.5e-68100Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
        MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA

Query:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
Subjt:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]6.0e-4172.03Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSA-AGGGENGGGGRPQAGGGGAAVIPVY
        MGRRR + L+ LL CST+   S+ALQQQI PTESNY QKT  EK  KDG+TN+I+  YSA  ITVS GIG GSA AGGGENGGG RP   GGG AVIPVY
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSA-AGGGENGGGGRPQAGGGGAAVIPVY

Query:  AAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AAGSAQAHHRQGR  NAGN +ENN GLLVA+VLAAIAHL+ VF
Subjt:  AAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein6.7e-3866.67Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQ------------GIGHGSAAGGGENGGGGRP
        MGRRR + L+FLLFCST+   S+ALQQQI P  TESNY QKT  +KHGK GVTN+I+  YS+ AITVS             G G  +AAGGGEN GG RP
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQ------------GIGHGSAAGGGENGGGGRP

Query:  QAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        +  GGG AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAIAHL  VF
Subjt:  QAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

A0A1S3BFU8 uncharacterized protein LOC1034893821.4e-3568.97Show/hide
Query:  RRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQAGGGGAAVIP
        RR + L+FLLFCST+   S+ALQQQI P  TESNY QKT   K GK GVTN+IS  YSA AITVS  I    G  +AAGGGENGGG RP   GGG AVIP
Subjt:  RRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQAGGGGAAVIP

Query:  VYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        VYAAGSAQA HRQGR  NAGN YENN GLLVA+VLAAIAHL  V+
Subjt:  VYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

A0A5A7SUI0 Uncharacterized protein1.4e-3568.97Show/hide
Query:  RRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQAGGGGAAVIP
        RR + L+FLLFCST+   S+ALQQQI P  TESNY QKT   K GK GVTN+IS  YSA AITVS  I    G  +AAGGGENGGG RP   GGG AVIP
Subjt:  RRELTLMFLLFCSTIPAISSALQQQILP--TESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI----GHGSAAGGGENGGGGRPQAGGGGAAVIP

Query:  VYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        VYAAGSAQA HRQGR  NAGN YENN GLLVA+VLAAIAHL  V+
Subjt:  VYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like1.1e-6799.3Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
        MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA

Query:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI HLHLVF
Subjt:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

A0A6J1JB47 uncharacterized protein LOC1114851592.9e-6596.48Show/hide
Query:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
        MGRRREL+LMFLLFCSTIPAISSA QQQILPTE NYHQKTNAEKHG+DGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA
Subjt:  MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYA

Query:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF
        AGSAQAHHRQGR RNAGNHYENNMGLLVASVLAAIAHLHLVF
Subjt:  AGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGAGTCAAATTACCA
CCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTG
CCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAA
GGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCTGCCATTGCTCATCTCCATTTAGTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
TGATTGTTATCACTCACAATCAAACAACAGTAAACCAGAAGAGTACAAACCGTGTCTTGAAGGGGCCTTCTTTCAGCAACAGTTTCAAAAAAAGATTCGAGTTCGTGTCT
CTTTTTAAAAGGATGTCTTATTCTAACCACTCTTGTTCCGTGTCCGTGTTCGTGTCCTTAAAAGAGATAAGATAGCTTTAGTGGATCAAAAGAAGACTTCCCTGCCATTT
TGTATAAGTATATCACACCATTCCTAACAGCCACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATG
TTCTTGCTGTTTTGTTCTACCATACCAGCCATTTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAA
GGATGGTGTCACTAACCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCG
GTAGACCTCAAGCAGGAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTAT
GAAAACAACATGGGGCTTCTGGTAGCTTCAGTTTTGGCTGCCATTGCTCATCTCCATTTAGTTTTCTGATATCAAGGCTGCTTCCATACAAGAACATTGTTAAATCTGTT
GATTGAGGTGTGTGCTTCAGCTTTCTTGTTGGATCTTTCTTTCCTGTTAAGATCAAGAAAAGTGCATAATAAGTGGCTTGCAAATGATTGTATATACAGAGACAGAACCT
CATAAACTCTTTTTTTGTTTGATAACTGTTGTATTGTACAGAGACAGTAGCCTTTTAATTGCGTCAATTACATGATTTCTGATTGGAAATGCAACAAAATTCTAC
Protein sequenceShow/hide protein sequence
MGRRRELTLMFLLFCSTIPAISSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQ
GRTRNAGNHYENNMGLLVASVLAAIAHLHLVF