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Carg01901 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01901
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationCarg_Chr04:8718792..8719406
RNA-Seq ExpressionCarg01901
SyntenyCarg01901
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4297.73Show/hide
Query:  SDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        +DMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTF+
Subjt:  SDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

KAG6601225.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4197.7Show/hide
Query:  SDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTF
        +DMDTSNPAVFCNGELLNM+SGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTF
Subjt:  SDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTF

KAG7032018.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]1.6e-57100Show/hide
Query:  MSFTMVDFSDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDTE
        MSFTMVDFSDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDTE
Subjt:  MSFTMVDFSDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDTE

Query:  RCASEDVETPKG
        RCASEDVETPKG
Subjt:  RCASEDVETPKG

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]3.4e-3995.35Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSD GVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFG  F+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.1e-4096.51Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTSNPAVFCNGELLN+HSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFG TF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein1.0e-3384.88Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIAE NK I VE WTDFG TF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

A0A1S3BGM8 replication protein A 14 kDa subunit B-like3.2e-3583.15Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDT
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFG TF+ ++
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDT

A0A5A7SU42 Replication protein A 14 kDa subunit B-like3.2e-3583.15Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDT
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNFVEVVGIA+ NK INVEHWTDFG TF+ ++
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDT

A0A6J1D9X1 replication protein A 14 kDa subunit B-like1.9e-3283.72Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTSNPAVF N ELL +H GRKIRAV QV +SDGGVVTGKSTDEQ LTVHGLP VPLMNFVEV+GIAE NKIINVEH TDFGNTF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

A0A6J1JC99 replication protein A 14 kDa subunit B-like1.6e-3995.35Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSD GVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFG  F+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B7.3e-2154.65Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTS+PA F NG LL  + G+K+RAV+QVI+SD G V GKSTD+Q + V G P  PL  ++EV+GIAE +  I  E WT+FG++F+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

Q9LXK1 Replication protein A 14 kDa subunit A1.3e-1750.57Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTS+P+ F NG LL    G+K+R V+QV  S+ G V GKSTD+  + V G  P  PL  ++EV+GIAE +  I  E WT+FGNTF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

Q9SDK9 Replication protein A 14 kDa subunit4.0e-1949.43Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEP
        MDTS PA F NGE+L M  GR++R VVQ  + +GG++ G+STD   LT+ G    P+ ++VE++GIAE N+ I  E  TDFG  F+P
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEP

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein9.2e-1950.57Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTS+P+ F NG LL    G+K+R V+QV  S+ G V GKSTD+  + V G  P  PL  ++EV+GIAE +  I  E WT+FGNTF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein9.2e-1950.57Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTS+P+ F NG LL    G+K+R V+QV  S+ G V GKSTD+  + V G  P  PL  ++EV+GIAE +  I  E WT+FGNTF+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHG-LPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein5.2e-2254.65Show/hide
Query:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE
        MDTS+PA F NG LL  + G+K+RAV+QVI+SD G V GKSTD+Q + V G P  PL  ++EV+GIAE +  I  E WT+FG++F+
Subjt:  MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCACCATGGTTGATTTTTCAGACATGGATACGTCAAATCCTGCAGTTTTTTGCAATGGTGAGTTATTGAACATGCATTCTGGAAGAAAGATTCGAGCAGTTGT
TCAAGTTATTCAAAGTGATGGTGGAGTCGTTACAGGAAAGTCTACGGATGAACAACATTTGACTGTTCATGGCTTGCCCACAGTCCCTCTCATGAACTTTGTAGAGGTGG
TTGGTATTGCTGAGGGCAATAAGATCATCAATGTTGAACATTGGACGGACTTTGGAAACACATTCGAGCCAGACACCGAGCGGTGTGCCAGCGAGGACGTTGAGACTCCA
AAGGGGTAG
mRNA sequenceShow/hide mRNA sequence
TCTGATCATAATGAACTTTGAATCCTAAAAATTATGTCATTCACCATGGTTGATTTTTCAGACATGGATACGTCAAATCCTGCAGTTTTTTGCAATGGTGAGTTATTGAA
CATGCATTCTGGAAGAAAGATTCGAGCAGTTGTTCAAGTTATTCAAAGTGATGGTGGAGTCGTTACAGGAAAGTCTACGGATGAACAACATTTGACTGTTCATGGCTTGC
CCACAGTCCCTCTCATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGGCAATAAGATCATCAATGTTGAACATTGGACGGACTTTGGAAACACATTCGAGCCAGACACC
GAGCGGTGTGCCAGCGAGGACGTTGAGACTCCAAAGGGGTAG
Protein sequenceShow/hide protein sequence
MSFTMVDFSDMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNFVEVVGIAEGNKIINVEHWTDFGNTFEPDTERCASEDVETP
KG