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Carg01936 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01936
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlycine-rich RNA-binding family protein
Genome locationCarg_Chr04:8481099..8482865
RNA-Seq ExpressionCarg01936
SyntenyCarg01936
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601184.1 Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2275.9Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ--------------------INDLKPEELLTSAVLMPASADLDCFI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                    INDLKPEELLTSAVLMPASADLDCFI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ--------------------INDLKPEELLTSAVLMPASADLDCFI

KAG7031984.1 Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-79100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQINDLKPEELLTSAVLMPASADLDCFIIMSLLSPLISENLQKLHAPKVVCTGFCLAANVARMAL
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQINDLKPEELLTSAVLMPASADLDCFIIMSLLSPLISENLQKLHAPKVVCTGFCLAANVARMAL
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQINDLKPEELLTSAVLMPASADLDCFIIMSLLSPLISENLQKLHAPKVVCTGFCLAANVARMAL

Query:  AMPGLAAQTFFEELAKLHRMRAYCDQLSSLASLLRYYVVDRTVDIDVDIFVIQSFLSS
        AMPGLAAQTFFEELAKLHRMRAYCDQLSSLASLLRYYVVDRTVDIDVDIFVIQSFLSS
Subjt:  AMPGLAAQTFFEELAKLHRMRAYCDQLSSLASLLRYYVVDRTVDIDVDIFVIQSFLSS

XP_022956605.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata]1.1e-11100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

XP_023003387.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima]1.1e-11100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

XP_023535688.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo]1.1e-11100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

TrEMBL top hitse value%identityAlignment
A0A1S3BGN5 glycine-rich RNA-binding protein RZ1C-like isoform X15.9e-1194.74Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITER LENAF+RFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

A0A5D3CG30 Glycine-rich RNA-binding protein RZ1C-like isoform X15.9e-1194.74Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITER LENAF+RFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

A0A6J1CFE7 glycine-rich RNA-binding protein RZ1C-like isoform X12.7e-1197.37Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

A0A6J1GY86 glycine-rich RNA-binding protein RZ1C-like isoform X15.4e-12100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

A0A6J1KMD7 glycine-rich RNA-binding protein RZ1C-like isoform X15.4e-12100Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B1.5e-0666.67Show/hide
Query:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        G  E RIFVGGLSWD+TER LE+ F R+GKI + QI
Subjt:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

P49311 Glycine-rich RNA-binding protein GRP2A2.7e-0563.64Show/hide
Query:  EYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        EYR FVGGL+W   ER LE AFS+FG+++DS+I
Subjt:  EYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

Q14103 Heterogeneous nuclear ribonucleoprotein D06.1e-0552.94Show/hide
Query:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIID
        A REE+++F+GGLSWD T++ L++ FS+FG+++D
Subjt:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIID

Q60668 Heterogeneous nuclear ribonucleoprotein D06.1e-0552.94Show/hide
Query:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIID
        A REE+++F+GGLSWD T++ L++ FS+FG+++D
Subjt:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIID

Q8RWN5 Glycine-rich RNA-binding protein RZ1C7.2e-0665.79Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.0e-0766.67Show/hide
Query:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        G  E RIFVGGLSWD+TER LE+ F R+GKI + QI
Subjt:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.0e-0766.67Show/hide
Query:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        G  E RIFVGGLSWD+TER LE+ F R+GKI + QI
Subjt:  GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

AT2G21660.1 cold, circadian rhythm, and rna binding 27.4e-0654.05Show/hide
Query:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        +G  EYR FVGGL+W   +R LE AF+++G +IDS+I
Subjt:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

AT2G21660.2 cold, circadian rhythm, and rna binding 27.4e-0654.05Show/hide
Query:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        +G  EYR FVGGL+W   +R LE AF+++G +IDS+I
Subjt:  AGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain5.1e-0765.79Show/hide
Query:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI
        MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QI
Subjt:  MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGGAGAGAGGAGTACCGAATATTTGTGGGAGGGTTGTCGTGGGACATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCA
GATAAATGATTTAAAACCAGAGGAACTCTTAACAAGTGCTGTGCTGATGCCTGCTTCAGCAGACCTTGATTGTTTTATTATAATGAGTTTGCTAAGTCCTCTAATCTCAG
AAAATCTTCAGAAGCTGCACGCTCCGAAAGTTGTTTGTACTGGTTTCTGTTTAGCAGCTAATGTGGCTAGAATGGCACTAGCGATGCCAGGCTTAGCAGCTCAGACATTT
TTTGAAGAATTGGCCAAACTGCATCGTATGAGGGCCTATTGTGATCAGTTGTCTTCTCTGGCGAGCTTGTTAAGATACTATGTGGTGGACAGAACAGTGGATATTGATGT
GGATATTTTTGTCATTCAAAGCTTCCTGAGCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGGAGAGAGGAGTACCGAATATTTGTGGGAGGGTTGTCGTGGGACATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCA
GATAAATGATTTAAAACCAGAGGAACTCTTAACAAGTGCTGTGCTGATGCCTGCTTCAGCAGACCTTGATTGTTTTATTATAATGAGTTTGCTAAGTCCTCTAATCTCAG
AAAATCTTCAGAAGCTGCACGCTCCGAAAGTTGTTTGTACTGGTTTCTGTTTAGCAGCTAATGTGGCTAGAATGGCACTAGCGATGCCAGGCTTAGCAGCTCAGACATTT
TTTGAAGAATTGGCCAAACTGCATCGTATGAGGGCCTATTGTGATCAGTTGTCTTCTCTGGCGAGCTTGTTAAGATACTATGTGGTGGACAGAACAGTGGATATTGATGT
GGATATTTTTGTCATTCAAAGCTTCCTGAGCTCTTAA
Protein sequenceShow/hide protein sequence
MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQINDLKPEELLTSAVLMPASADLDCFIIMSLLSPLISENLQKLHAPKVVCTGFCLAANVARMALAMPGLAAQTF
FEELAKLHRMRAYCDQLSSLASLLRYYVVDRTVDIDVDIFVIQSFLSS