; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg01947 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01947
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCollagen alpha-1(XXVII) chain
Genome locationCarg_Chr04:8438513..8442111
RNA-Seq ExpressionCarg01947
SyntenyCarg01947
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB1322541.1 unnamed protein product [Coregonus sp. 'balchen']1.2e-1051.47Show/hide
Query:  GRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGT
        G  GCPGT+   G  GC GT+   G  GCPGT+   G  GCPGT+   G  GCPGT+   G  GCPGT
Subjt:  GRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGT

KAG6601174.1 Collagen alpha-1(XXVII) chain, partial [Cucurbita argyrosperma subsp. sororia]3.7e-14859.4Show/hide
Query:  MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRD
        MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAV G DGCLGTLAVFGRD CPGTLAVFGRDGC GTLAVFGRD
Subjt:  MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRD

Query:  GCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDGCPGYTS------CP-----------DATVALLS-----------GRDGCPG
        GCPGTLAV+GRDGCPGTLAV+GRDGCPGTLAV+GRDGCPGTLAV GR GCPG  +      CP             T+A+             GR GCPG
Subjt:  GCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDGCPGYTS------CP-----------DATVALLS-----------GRDGCPG

Query:  TLAVRTR-RLPCTLAVRSR-RLPWYTSCSGCDGCP-----------EYKLAVRTR-----------RLPC-----------CPDTRYT----SCPDATVT
        TLAV  R   P TLAV  R   P   +  G  GCP              LAV  R           R  C           CP T        CP     
Subjt:  TLAVRTR-RLPCTLAVRSR-RLPWYTSCSGCDGCP-----------EYKLAVRTR-----------RLPC-----------CPDTRYT----SCPDATVT

Query:  SFR---PWYTSV-GRDGCPGTLAVRTRRLPWYTSCPDATVAL--------GTLAVRTRRLPWYTSCPDATVALNTLVALVEYKITVALVTLAVYGRSGCL
          R   P   +V GR GCPGTLAVRTRRLPWYTSCPDA VAL        GTLAVRTRRLPWYTSC DATVAL    A       VALVTLA        
Subjt:  SFR---PWYTSV-GRDGCPGTLAVRTRRLPWYTSCPDATVAL--------GTLAVRTRRLPWYTSCPDATVALNTLVALVEYKITVALVTLAVYGRSGCL

Query:  GYTSCVRTQRLPWYTSCPDA----AVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQR---------------FPWYTS--C
             VRTQRLPWYTSC DA    AVALVTLAV GRSGCLG              TLAVYGRSGCLGYTSCVRTQR                PWYTS  C
Subjt:  GYTSCVRTQRLPWYTSCPDA----AVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQR---------------FPWYTS--C

Query:  PDTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGVSGRSGCLGYTS---CVRTQRLPW
        PDTSVALAAVALVTLAVSGRSGCLGTLA               +     YTS    VRT RLPW
Subjt:  PDTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGVSGRSGCLGYTS---CVRTQRLPW

KAG7031973.1 Cuticle collagen bli-1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-281100Show/hide
Query:  MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRD
        MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRD
Subjt:  MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRD

Query:  GCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDATVALLSGRDGCPGTLAVRTRRLPCTLAVRSRRLPWYTSCSGC
        GCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDATVALLSGRDGCPGTLAVRTRRLPCTLAVRSRRLPWYTSCSGC
Subjt:  GCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDATVALLSGRDGCPGTLAVRTRRLPCTLAVRSRRLPWYTSCSGC

Query:  DGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSFRPWYTSVGRDGCPGTLAVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALV
        DGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSFRPWYTSVGRDGCPGTLAVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALV
Subjt:  DGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSFRPWYTSVGRDGCPGTLAVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALV

Query:  EYKITVALVTLAVYGRSGCLGYTSCVRTQRLPWYTSCPDAAVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCP
        EYKITVALVTLAVYGRSGCLGYTSCVRTQRLPWYTSCPDAAVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCP
Subjt:  EYKITVALVTLAVYGRSGCLGYTSCVRTQRLPWYTSCPDAAVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCP

Query:  DTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGVSGRSGCLGYTSCVRTQRLPWLH
        DTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGVSGRSGCLGYTSCVRTQRLPWLH
Subjt:  DTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGVSGRSGCLGYTSCVRTQRLPWLH

OWF38557.1 hypothetical protein KP79_PYT09907 [Mizuhopecten yessoensis]1.0e-1241.11Show/hide
Query:  LGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV
        +GT  V GRD C+GT  + GR+ C GT  + GR+ C GT  + GR+   G   + GR+ C GT  + GR+ C GT  + GR+ C GT  +
Subjt:  LGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV

XP_042194554.1 LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily KQT member 4 [Callorhinchus milii]2.8e-1527.36Show/hide
Query:  SCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGT----------------LAVFGRDGCPGTLAVFGRD
        SC+GT+   G  GC+GT+      GC GT+   G  GC G   +FG   C GT+  F   G  GT                +A FG  GC G +   G  
Subjt:  SCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGT----------------LAVFGRDGCPGTLAVFGRD

Query:  GCPGTL-AVGRDGCPGYTSCPDATVALLSGRDGCPGTL-AVRTRRLPCTLAVRSRRLPWYTSCSGCDGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSF
        GC GT+  VG  GC G   C         G  GC GT+  V        LA+ +    W      C G                       C  A     
Subjt:  GCPGTL-AVGRDGCPGYTSCPDATVALLSGRDGCPGTL-AVRTRRLPCTLAVRSRRLPWYTSCSGCDGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSF

Query:  RPWYTSVGRDGCPGTL-AVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALVEYKITVALV--TLAVYGRSGCLGYTSCVRTQRL
              VG  GC GT+  V T        C  A   +GT+                  A+  +V L  + +    V   +A +G  GC+G   CV T   
Subjt:  RPWYTSVGRDGCPGTL-AVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALVEYKITVALV--TLAVYGRSGCLGYTSCVRTQRL

Query:  PWYTSCPDAAVALVTLAVSGRSGCLGYTSC----LCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCPDTSVALAAVALV-TLAVSGRSGCLGTL
             C  A   + T+   G  GC+G   C    L  D AV  V     G  G  G   CV T        C  T      V    T+  +G  GC+GT+
Subjt:  PWYTSCPDAAVALVTLAVSGRSGCLGYTSC----LCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCPDTSVALAAVALV-TLAVSGRSGCLGTL

Query:  AGSGRSGCLGTLG
           G  GC+G +G
Subjt:  AGSGRSGCLGTLG

TrEMBL top hitse value%identityAlignment
A0A667Y5B3 Uncharacterized protein3.7e-1331.78Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG
        G  +  GT A+ G +G  GT  V G +G PGT A+ G +G  GT A+ G +  PGT  V G +  PGT  V G +  PGT  V G +  PGT  V G +G
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG

Query:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-
         PG  + P      L G +G PGT A+  T  +P T A+  +  LP   +  G +  P  +    T   P     P T      +A   T   P    V 
Subjt:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-

Query:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS
        G +G PGT A+  T  +P     P      GT A+  T  +P     P A     T  L        T AL  T A+ G  G  G  +   T+ LP   +
Subjt:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS

Query:  CPDAAVALVTLAVSGRSGCLG
         P       T  + G  G  G
Subjt:  CPDAAVALVTLAVSGRSGCLG

A0A667Y5H1 Uncharacterized protein2.0e-1431.46Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-----
        G   CLG  A+ G +G  GT A+ G +  PGT  V G +   GT A+ G +G PGT A+ G +  PGT  V G +G PGT A+ G +G PGT  V     
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-----

Query:  --GRDGCPGYTSCPDATVALLSGRDGCPGTLAVR--TRRLPCTLA-VRSRRLPWYTSCSGCDGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSFRPWYT
          G +G PG    P      L G +G PGT   R  T   P T A   +   P   +  G +G P  +    T  LP       T       T   P   
Subjt:  --GRDGCPGYTSCPDATVALLSGRDGCPGTLAVR--TRRLPCTLA-VRSRRLPWYTSCSGCDGCPEYKLAVRTRRLPCCPDTRYTSCPDATVTSFRPWYT

Query:  SV-GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNTLVALVEYKITVALVTLAVYGRSGCLGYTSCVRTQRLPWYTS
         V G +G PGT A+  T  LP     P      G  A+  T  LP     P  T AL                T A+ G  G  G  +   T+ LP   +
Subjt:  SV-GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNTLVALVEYKITVALVTLAVYGRSGCLGYTSCVRTQRLPWYTS

Query:  CPDAAVALVTLAVSGRSGCLG
         P       T  + G  G  G
Subjt:  CPDAAVALVTLAVSGRSGCLG

A0A667YBX7 Uncharacterized protein3.7e-1331.78Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG
        G  +  GT A+ G +G  GT  V G +G PGT A+ G +G  GT A+ G +  PGT  V G +  PGT  V G +  PGT  V G +  PGT  V G +G
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG

Query:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-
         PG  + P      L G +G PGT A+  T  +P T A+  +  LP   +  G +  P  +    T   P     P T      +A   T   P    V 
Subjt:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-

Query:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS
        G +G PGT A+  T  +P     P      GT A+  T  +P     P A     T  L        T AL  T A+ G  G  G  +   T+ LP   +
Subjt:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS

Query:  CPDAAVALVTLAVSGRSGCLG
         P       T  + G  G  G
Subjt:  CPDAAVALVTLAVSGRSGCLG

A0A667YFH5 Uncharacterized protein3.7e-1331.78Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG
        G  +  GT A+ G +G  GT  V G +G PGT A+ G +G  GT A+ G +  PGT  V G +  PGT  V G +  PGT  V G +  PGT  V G +G
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG

Query:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-
         PG  + P      L G +G PGT A+  T  +P T A+  +  LP   +  G +  P  +    T   P     P T      +A   T   P    V 
Subjt:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-

Query:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS
        G +G PGT A+  T  +P     P      GT A+  T  +P     P A     T  L        T AL  T A+ G  G  G  +   T+ LP   +
Subjt:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS

Query:  CPDAAVALVTLAVSGRSGCLG
         P       T  + G  G  G
Subjt:  CPDAAVALVTLAVSGRSGCLG

A0A667YMV0 Uncharacterized protein3.7e-1331.78Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG
        G  +  GT A+ G +G  GT  V G +G PGT A+ G +G  GT A+ G +  PGT  V G +  PGT  V G +  PGT  V G +  PGT  V G +G
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAV-GRDG

Query:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-
         PG  + P      L G +G PGT A+  T  +P T A+  +  LP   +  G +  P  +    T   P     P T      +A   T   P    V 
Subjt:  CPGYTSCPDATVALLSGRDGCPGTLAV-RTRRLPCTLAV-RSRRLPWYTSCSGCDGCPEYKLAVRTRRLP---CCPDTRYTSCPDATV-TSFRPWYTSV-

Query:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS
        G +G PGT A+  T  +P     P      GT A+  T  +P     P A     T  L        T AL  T A+ G  G  G  +   T+ LP   +
Subjt:  GRDGCPGTLAV-RTRRLPWYTSCPDATVALGTLAV-RTRRLPWYTSCPDATVALNT--LVALVEYKITVALV-TLAVYGRSGCLGYTSCVRTQRLPWYTS

Query:  CPDAAVALVTLAVSGRSGCLG
         P       T  + G  G  G
Subjt:  CPDAAVALVTLAVSGRSGCLG

SwissProt top hitse value%identityAlignment
C7DZK3 Collagen alpha-1(XXVII) chain A3.3e-0636.26Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPG
        G     G+  V G  G  GT+   GR+G PGT  + G+DG  GT    G  G  G   + G+ G PG + V G  G  G+    G  G PG
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPG

P04258 Collagen alpha-1(III) chain3.3e-0636.27Show/hide
Query:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGC
        G N   G     G  G  GT    GRDG PG+  + GRDG  G     G +G PG     G  G PG +   G+ G  G     G  G PG    G  G 
Subjt:  GHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGC

Query:  PG
        PG
Subjt:  PG

Q09457 Cuticle collagen bli-11.7e-1039.02Show/hide
Query:  GTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPG-----TLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLA-VGRDGC
        GT  V G DG  G   V G+DG PG     G  G +G+    G+ G PG       ++ G  G PG + V GRDG PGT    G+DG PG     GRDG 
Subjt:  GTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPG-----TLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLA-VGRDGC

Query:  PGYTSCPDATVALLSGRDG--CP
         G    P  +     G DG  CP
Subjt:  PGYTSCPDATVALLSGRDG--CP

Q5QNQ9 Collagen alpha-1(XXVII) chain1.1e-0637.17Show/hide
Query:  GRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTL---AVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDA
        G+ G  G     G  G PG   V GR G  GT     + GRDG PG     G DG PG +   GR G PG   + G  G PG    G  G PG    P  
Subjt:  GRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTL---AVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDA

Query:  TVALLSGRDGCPG
              G  G PG
Subjt:  TVALLSGRDGCPG

Q8IZC6 Collagen alpha-1(XXVII) chain2.5e-0636.28Show/hide
Query:  GRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTL---AVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDA
        G+ G  G   V G  G PG   V GR G  G      + GRDG  G     G DG PG +   G+ G PG   + G  G PG    G  G PG    P  
Subjt:  GRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTL---AVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDA

Query:  TVALLSGRDGCPG
              GR G PG
Subjt:  TVALLSGRDGCPG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTCCAATCGTGGTTCGAACGCCACTTTCAGAATCCTCGGGACTTTCGTTCATTATCTCCATCCCAATGTGGGGGTCCAATGGTGGTCGAATGCCAGGGAAGCGG
AATGCTTTTGGAGCATTATCATGAATGGAAGCTGTTCGGACACAACAGTTGCCTTGGTACACTAGCTGTGTTCGGACGCGACGGCTGCCTAGGTACACTAGCTGTGTTCG
GACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCATGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGA
CGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCGGACGCGA
CGGTTGCCCTGGTTACACTAGCTGTCCGGACGCGACGGTTGCCCTGCTGTCCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGTACAC
TAGCTGTCCGGTCGCGACGGTTGCCCTGGTACACTAGCTGTTCCGGATGCGACGGTTGCCCTGAGTACAAACTAGCTGTCCGGACGCGACGGTTGCCCTGCTGTCCGGAC
ACCCGGTACACTAGCTGTCCGGACGCGACGGTCACTAGCTTCCGTCCCTGGTACACTAGCGTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTT
GCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGA
ATACACTAGTTGCCTTGGTAGAATACAAAATAACGGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGG
TTGCCTTGGTACACTAGCTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTCTGTGTACGGACGCAGC
GGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTTCCTTGGTACACTAGCTGTCCGGACACATCAG
TTGCCTTGGCAGCGGTAGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTACACTAGCTGGGTCCGGACGCAGCGGTTGCCTTGGTACACTAGGTGTG
TCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTCCAATCGTGGTTCGAACGCCACTTTCAGAATCCTCGGGACTTTCGTTCATTATCTCCATCCCAATGTGGGGGTCCAATGGTGGTCGAATGCCAGGGAAGCGG
AATGCTTTTGGAGCATTATCATGAATGGAAGCTGTTCGGACACAACAGTTGCCTTGGTACACTAGCTGTGTTCGGACGCGACGGCTGCCTAGGTACACTAGCTGTGTTCG
GACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCATGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGA
CGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTGTTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCGGACGCGA
CGGTTGCCCTGGTTACACTAGCTGTCCGGACGCGACGGTTGCCCTGCTGTCCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGTACAC
TAGCTGTCCGGTCGCGACGGTTGCCCTGGTACACTAGCTGTTCCGGATGCGACGGTTGCCCTGAGTACAAACTAGCTGTCCGGACGCGACGGTTGCCCTGCTGTCCGGAC
ACCCGGTACACTAGCTGTCCGGACGCGACGGTCACTAGCTTCCGTCCCTGGTACACTAGCGTCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTT
GCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGGTACACTAGCTGTCCGGACGCGACGGTTGCCCTGA
ATACACTAGTTGCCTTGGTAGAATACAAAATAACGGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGG
TTGCCTTGGTACACTAGCTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTCTGTGTACGGACGCAGC
GGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTACGGACGCAGCGGTTTCCTTGGTACACTAGCTGTCCGGACACATCAG
TTGCCTTGGCAGCGGTAGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTACACTAGCTGGGTCCGGACGCAGCGGTTGCCTTGGTACACTAGGTGTG
TCCGGACGCAGCGGTTGCCTTGGTTACACTAGCTGTGTCCGGACGCAGCGGTTGCCTTGGTTACACTAG
Protein sequenceShow/hide protein sequence
MGLQSWFERHFQNPRDFRSLSPSQCGGPMVVECQGSGMLLEHYHEWKLFGHNSCLGTLAVFGRDGCLGTLAVFGRDGCPGTLAVFGRDGCHGTLAVFGRDGCPGTLAVFG
RDGCPGTLAVFGRDGCPGTLAVFGRDGCPGTLAVGRDGCPGYTSCPDATVALLSGRDGCPGTLAVRTRRLPCTLAVRSRRLPWYTSCSGCDGCPEYKLAVRTRRLPCCPD
TRYTSCPDATVTSFRPWYTSVGRDGCPGTLAVRTRRLPWYTSCPDATVALGTLAVRTRRLPWYTSCPDATVALNTLVALVEYKITVALVTLAVYGRSGCLGYTSCVRTQR
LPWYTSCPDAAVALVTLAVSGRSGCLGYTSCLCTDAAVALVTLAVYGRSGCLGYTSCVRTQRFPWYTSCPDTSVALAAVALVTLAVSGRSGCLGTLAGSGRSGCLGTLGV
SGRSGCLGYTSCVRTQRLPWLH