CuGenDBv2

Gene ID	Carg01972
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit d, mitochondrial
Genome location	Carg_Chr04:8285116..8287469
RNA-Seq Expression	Carg01972
Synteny	Carg01972
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk (cellular component) GO:0015078 - proton transmembrane transporter activity (molecular function)
InterPro domains	IPR008689 - ATP synthase, F0 complex, subunit D, mitochondrial IPR036228 - ATP synthase, F0 complex, subunit D superfamily, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022945159.1 ATP synthase subunit d, mitochondrial [Cucurbita moschata]

9.7e-83

95.83

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAE KSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

XP_022956748.1 ATP synthase subunit d, mitochondrial-like [Cucurbita moschata]

1.1e-86

100

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

XP_022966719.1 ATP synthase subunit d, mitochondrial [Cucurbita maxima]

4.8e-82

94.64

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNS+LQTKFSQEPEPIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFD+LLVELKEAE KSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

XP_022974559.1 ATP synthase subunit d, mitochondrial-like [Cucurbita maxima]

8.8e-84

96.43

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKVADA FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLV++YKEAYDS+EIPKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTA+EYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

XP_023514325.1 ATP synthase subunit d, mitochondrial-like [Cucurbita pepo subsp. pepo]

4.2e-86

98.81

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKV+DATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAEEKSLKESERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CDD8 ATP synthase subunit d, mitochondrial

1.2e-81

92.86

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKVAD  FKASKNIDWDGMAKLLVSDEARKEF+ LRRAF+EVNS LQTKFSQEPEPIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFD+LLVELKEAE KSLKESERLEKE+VEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

A0A6J1G072 ATP synthase subunit d, mitochondrial

4.7e-83

95.83

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAE KSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

A0A6J1GY12 ATP synthase subunit d, mitochondrial

5.4e-87

100

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

A0A6J1HUL8 ATP synthase subunit d, mitochondrial

2.3e-82

94.64

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Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKV D  FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNS+LQTKFSQEPEPIDWEYYRKGIG RLVDMYKEAYDSIE+PKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFD+LLVELKEAE KSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

A0A6J1IHY9 ATP synthase subunit d, mitochondrial

4.3e-84

96.43

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSGTVKKVADA FKASKNIDWDGMAKLLVSDEARKEFS+LRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLV++YKEAYDS+EIPKFVDTVTPQYK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTA+EYFEKHPELRKKFDDEIRNDYWGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

SwissProt top hits

e value

%identity

Alignment

Q9FT52 ATP synthase subunit d, mitochondrial

2.7e-75

82.14

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSG  KK+AD  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQEPEPIDW+YYRKGIG  +VD YKEAYDSIEIPK+VD VTP+YK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFD+LLVELKEAE+KSLKESERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Arabidopsis top hits

e value

%identity

Alignment

AT3G52300.1 ATP synthase D chain, mitochondrial

1.9e-76

82.14

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSG  KK+AD  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQEPEPIDW+YYRKGIG  +VD YKEAYDSIEIPK+VD VTP+YK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
        PKFD+LLVELKEAE+KSLKESERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Subjt:  PKFDSLLVELKEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

AT3G52300.2 ATP synthase D chain, mitochondrial

2.7e-46

77.78

Show/hide

Query:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK
        MSG  KK+AD  FKAS+ IDWDGMAK+LV+DEAR+EFSNLRRAF+EVN+ LQTKFSQEPEPIDW+YYRKGIG  +VD YKEAYDSIEIPK+VD VTP+YK
Subjt:  MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYK

Query:  PKFDSLLV
        PKFD+L++
Subjt:  PKFDSLLV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTACCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTT
CTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCAGCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCC
GCCTGGTCGACATGTACAAAGAGGCTTATGACAGCATCGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTG
AAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGAGGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTT
TGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAATGACTACTGGGGCTATTGA

mRNA sequence

Show/hide mRNA sequence

TGAGCGCACAACGAATTGCCCTCTCTCACAGTTCCCATTGATTTTCGTCTTTTCGCTGCCAAATCCAGAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGCTACCT
TCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGTAAGGAGTTCTCAAACCTTCGCCGAGCCTTCGAGGAGGTTAACTCA
GCCCTCCAGACTAAATTTAGCCAGGAACCGGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGACCCCGCCTGGTCGACATGTACAAAGAGGCTTATGACAGCAT
CGAGATCCCCAAGTTTGTAGACACAGTGACTCCGCAGTACAAACCTAAATTTGATTCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAATCCCTGAAGGAGTCTGAGA
GGTTGGAGAAGGAGATTGTCGAAGTTCAAGAATTGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGAT
GAAATCCGAAATGACTACTGGGGCTATTGACTAGAAATTACAGTTGAACCGCCAAAGTTTCCGAATTTAATTTCATAAACCTTTCCGGGACTTGTTTTGCTGCAGATGTT
TGGTCAGTAATAAAACAAACCAGATAGGTCCTCTACAATTTGGTTGCATTTCCTTTCAGAATCATGGTGACGAAATTGATTAGAGAACCCAAGTTTTTCCTCGAAATGAC
ATTGTCAGAGTTCCAATTAACTCTGAGGTACATTTTTTAATGAGATTGTTATGATATCTC

Protein sequence

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MSGTVKKVADATFKASKNIDWDGMAKLLVSDEARKEFSNLRRAFEEVNSALQTKFSQEPEPIDWEYYRKGIGPRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDSLLVEL
KEAEEKSLKESERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Carg01972 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome