; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg01995 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg01995
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1-like
Genome locationCarg_Chr04:8155536..8156981
RNA-Seq ExpressionCarg01995
SyntenyCarg01995
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601127.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-16098.98Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT--GAAS
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT   AAS
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT--GAAS

Query:  TSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        TSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  TSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

KAG7031925.1 Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]7.4e-163100Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS

Query:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_022956997.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]1.0e-15997.97Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT---GAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT    AA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT---GAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_022988928.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]3.5e-16098.63Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDR RSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQT  AASTS
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS

Query:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSG GELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

XP_023527541.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo]3.1e-16199.32Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT AASTS
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS

Query:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS LHLESGNHLRD
Subjt:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein1.4e-13885.48Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLI G G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  T---TGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH
        +     AASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Subjt:  T---TGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH

Query:  LRD
         R+
Subjt:  LRD

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 12.8e-13985.81Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  T---TGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH
        +     AASTSNATTPRSFETTSSHQDASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Subjt:  T---TGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH

Query:  LRD
         R+
Subjt:  LRD

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 13.7e-13681.5Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG
        MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   QPPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLIGG G
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---QPPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGG

Query:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ
        N+G D+ VKGD GDGS+ VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ
Subjt:  NHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQ

Query:  T---TGAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVK
        +     AASTSNATTPRSFETTSSHQ                DASFKKSLPG VRAPAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD K
Subjt:  T---TGAASTSNATTPRSFETTSSHQ----------------DASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVK

Query:  NALPSISHLHLESGNHLRD
        NA PSISHLHL+SGNH R+
Subjt:  NALPSISHLHLESGNHLRD

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like4.9e-16097.97Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT---GAA
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT    AA
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTT---GAA

Query:  STSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        STSNATTPRSFETTSSHQDASFKKSLPGQV+APAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  STSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

A0A6J1JNR9 protein LATERAL ROOT PRIMORDIUM 1-like isoform X21.7e-16098.63Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY
        MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDR RSLENLKRTQDFGFGKGDSLIGGGGNHGY
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGY

Query:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS
        DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQT  AASTS
Subjt:  DDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTS

Query:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
        NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSG GELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Subjt:  NATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 23.2e-3145.86Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQ
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M      G SGS  AG     +    +      TS+++   S        
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQ

Query:  DASFKKSLPGQVRAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD
        +ASF    PG+V + A+F+C +++ +   G+G+  YQ TVNIGGH+FKG LYDQG +
Subjt:  DASFKKSLPGQVRAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.7e-5346.2Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A     P  N    ++     + R ++  N   TQ   F     + +G 
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG

Query:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I
          N    +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++      
Subjt:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I

Query:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES
          Q T   STSN T P+SFET+SS QD    +++ PGQVRA AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   +
Subjt:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES

Query:  GNH
         NH
Subjt:  GNH

Q9M2U4 Protein SHI RELATED SEQUENCE 64.4e-3347.9Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSH
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                  SSS   ++ K+ I  Q++   S           TT+S 
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSH

Query:  QDASFKKSLPGQVRAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS
        Q+  F++ LPG++ APAVFK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Subjt:  QDASFKKSLPGQVRAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS

Q9SD40 Protein SHI RELATED SEQUENCE 19.5e-2842.39Show/hide
Query:  GDSLIGGGGNHGYDDQVK-GDGGDGSLGV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRP
        G++   G G       ++ G  G GS GV C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPA++RRERQ  +      T    G S    KR 
Subjt:  GDSLIGGGGNHGYDDQVK-GDGGDGSLGV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRP

Query:  KVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG
        +  +P       +TS++       + S  +  +F    P +V + AVF+C RV+++  GE E  YQ  V+IGGH+FKG LYD G
Subjt:  KVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG

Q9XGX0 Protein SHORT INTERNODES7.3e-2846.95Show/hide
Query:  GDGSLG-VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGA--KRPKVLIPSQTTGAASTSNATTP
        G GS G  C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ  +      ++G       G+  KR +  IP     A STS A T 
Subjt:  GDGSLG-VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGA--KRPKVLIPSQTTGAASTSNATTP

Query:  RSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG
             TS  +  +F    P +V + AVF+C RV+++   E E  Y+  V+IGGHVFKG LYDQG
Subjt:  RSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 63.1e-3447.9Show/hide
Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSH
        VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                  SSS   ++ K+ I  Q++   S           TT+S 
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSH

Query:  QDASFKKSLPGQVRAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS
        Q+  F++ LPG++ APAVFK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Subjt:  QDASFKKSLPGQVRAPAVFKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS

AT4G36260.1 Lateral root primordium (LRP) protein-related2.2e-3245.86Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQ
        CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M      G SGS  AG     +    +      TS+++   S        
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQ

Query:  DASFKKSLPGQVRAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD
        +ASF    PG+V + A+F+C +++ +   G+G+  YQ TVNIGGH+FKG LYDQG +
Subjt:  DASFKKSLPGQVRAPAVFKCHRVTAI-SSGEGELTYQATVNIGGHVFKGFLYDQGAD

AT5G12330.1 Lateral root primordium (LRP) protein-related1.2e-5446.2Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A     P  N    ++     + R ++  N   TQ   F     + +G 
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG

Query:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I
          N    +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++      
Subjt:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I

Query:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES
          Q T   STSN T P+SFET+SS QD    +++ PGQVRA AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   +
Subjt:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES

Query:  GNH
         NH
Subjt:  GNH

AT5G12330.2 Lateral root primordium (LRP) protein-related1.2e-5446.2Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A     P  N    ++     + R ++  N   TQ   F     + +G 
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG

Query:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I
          N    +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++      
Subjt:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I

Query:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES
          Q T   STSN T P+SFET+SS QD    +++ PGQVRA AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   +
Subjt:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES

Query:  GNH
         NH
Subjt:  GNH

AT5G12330.4 Lateral root primordium (LRP) protein-related1.2e-5446.2Show/hide
Query:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG
        M+GLRDV  +A  P+  HQ+  +IS   H +    ++ ALG  VG+ PLL A     P  N    ++     + R ++  N   TQ   F     + +G 
Subjt:  MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEV-----SDRSRSLENLKRTQDFGF-GKGDSLIGG

Query:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I
          N    +   G G  G+   C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++       T+GSS S+S+G K+P+++      
Subjt:  GGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVL-----I

Query:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES
          Q T   STSN T P+SFET+SS QD    +++ PGQVRA AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   +
Subjt:  PSQTTGAASTSNATTPRSFETTSSHQD-ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ES

Query:  GNH
         NH
Subjt:  GNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACACACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCTTCCTC
CACCGCTCTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAAGTTAGTGATCGTAGTCGGAGTT
TGGAGAATCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATAGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGAT
GGTTCTCTGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGT
GAAGAGCACGTGGGTGCCGGCATCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAA
GGCCTAAAGTCTTGATTCCCTCACAGACTACCGGCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCAAG
AAGTCGTTACCGGGGCAAGTTCGGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATTGG
TGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTAG
mRNA sequenceShow/hide mRNA sequence
TTTTGGTTTAAGAAATTAATTCTTTTTCACCACACAAACACACACACACACACACCGCAAAATCCCCACCTCCCAAACAAACTGAACTCTGAATTTCATCATTTAAATAA
TACTGTTCTTGGCCTTCTCGCCCCAATTCAGATTAACCCTCTTTCATTCTCAATCTCAATTTCCAGACCTTTCTTTCTCCTTTTGTGTTAATACAACAATGTTGGGTCTC
CGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACACACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCTTCCTCCACCGCTCTTGG
CGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAAGTTAGTGATCGTAGTCGGAGTTTGGAGAATCTAA
AGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATAGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTCTGGGT
GTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTG
GGTGCCGGCATCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAAAGTCT
TGATTCCCTCACAGACTACCGGCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCAAGAAGTCGTTACCG
GGGCAAGTTCGGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTT
CAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTAG
Protein sequenceShow/hide protein sequence
MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGD
GSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFK
KSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD