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Carg02002 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02002
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsigma factor binding protein 1, chloroplastic-like
Genome locationCarg_Chr04:8115063..8115443
RNA-Seq ExpressionCarg02002
SyntenyCarg02002
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022957180.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]1.6e-61100Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_022986090.1 uncharacterized protein LOC111483942 [Cucurbita maxima]3.4e-5693.65Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPP DD VLQNFDASFEEML GFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_023514832.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]4.6e-6199.21Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIA DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

XP_023542375.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-3671.11Show/hide
Query:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPE D V+QNFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

XP_038892750.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]7.9e-3774.07Show/hide
Query:  MDVIGKKPPKRTKKS-AAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI---AADRNFQSSA---FLDYQILGDDNLIDRDHRLVAGKIE
        M+V GKK PKR+KKS AA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI   A+DRN QSSA   FLDYQ+LGDD+L      LV+GK+E
Subjt:  MDVIGKKPPKRTKKS-AAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI---AADRNFQSSA---FLDYQILGDDNLIDRDHRLVAGKIE

Query:  TAAYQSLVA--PPEDDF-VLQNFDASFEEMLHGFF
        TAAY+S VA  PP DD  VLQNFDASF EM HGF+
Subjt:  TAAYQSLVA--PPEDDF-VLQNFDASFEEMLHGFF

TrEMBL top hitse value%identityAlignment
A0A6J1CBX0 uncharacterized protein LOC1110101494.7e-3569.57Show/hide
Query:  MDVIGKKPPK--RTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI----AADRNF----QSSAFLDYQIL--GDDNLIDRD--HR
        MDVIG+K  K  R+KKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FMELI    AADRN      S+AFLD+Q+L   DD+ IDRD  HR
Subjt:  MDVIGKKPPK--RTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI----AADRNF----QSSAFLDYQIL--GDDNLIDRD--HR

Query:  LVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        LV+G IE ++YQS +APP DD +LQNFDA+F +M HGF
Subjt:  LVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1G190 sigma factor binding protein 1, chloroplastic-like1.1e-3670.37Show/hide
Query:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPE D V++NFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1GZT9 sigma factor binding protein 1, chloroplastic-like7.7e-62100Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPPEDDFVLQNFDASFEEMLHGFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

A0A6J1HP65 sigma factor binding protein 1, chloroplastic-like1.5e-3670.37Show/hide
Query:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA
        MD+  K+  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELIAA    DRN       +SAFLDYQ+LGDD+L D DHRLVA
Subjt:  MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVA

Query:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF
        GKIETAAYQS VAPPE D V+QNFDASF EM   F
Subjt:  GKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGF

A0A6J1JD32 uncharacterized protein LOC1114839421.7e-5693.65Show/hide
Query:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL
        MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSL
Subjt:  MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSL

Query:  VAPPEDDFVLQNFDASFEEMLHGFFA
        VAPP DD VLQNFDASFEEML GFFA
Subjt:  VAPPEDDFVLQNFDASFEEMLHGFFA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.9e-0457.78Show/hide
Query:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        PPK+ +KS       KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.5e-0636.15Show/hide
Query:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA
        + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A         +NL  R  H+   G+ ++  
Subjt:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA

Query:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA
        Y+ L A  ED F+     A F     GFF+
Subjt:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.3e-0557.78Show/hide
Query:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS
        PPK+ +KS       KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Subjt:  PPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS

AT3G56710.1 sigma factor binding protein 11.1e-0736.15Show/hide
Query:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA
        + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A         +NL  R  H+   G+ ++  
Subjt:  IGKKPPKRTKKSAA---GFKVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILGDDNLIDRD-HRLVAGKIETAA

Query:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA
        Y+ L A  ED F+     A F     GFF+
Subjt:  YQSLVAPPEDDFVLQNFDASFEEMLHGFFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTT
TAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAA
TCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTG
CAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTT
TAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAA
TCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTG
CAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA
Protein sequenceShow/hide protein sequence
MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVL
QNFDASFEEMLHGFFA