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Carg02004 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02004
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Genome locationCarg_Chr04:8100363..8103599
RNA-Seq ExpressionCarg02004
SyntenyCarg02004
Gene Ontology termsGO:0006979 - response to oxidative stress (biological process)
GO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein
IPR016488 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601118.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]2.0e-67100Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

XP_022957489.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata]4.5e-6799.24Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT+SQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

XP_022985413.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]3.8e-6698.48Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT S IRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

XP_023552714.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo]3.8e-6698.48Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

XP_038892169.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]3.2e-6596.21Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

TrEMBL top hitse value%identityAlignment
A0A0A0KRV0 Uncharacterized protein2.1e-6292.42Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YV+GREGLVQD G+KDQG SNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

A0A1S3BH79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.3e-6494.7Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQD G+KDQG+SNFLKNFY+SNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

A0A6J1CBT6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 65.2e-6188.64Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFT R LKVPPNSASLEEARNRVFDFFRSACRSLP IM+IYNLDDV T SQ+RS++AS+IRKNSH+ DPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVG EGLVQD+G+KDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

A0A6J1H232 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 62.2e-6799.24Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT+SQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

A0A6J1JDJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.8e-6698.48Show/hide
Query:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
        MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT S IRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ
Subjt:  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQ

Query:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
        YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF
Subjt:  YVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

SwissProt top hitse value%identityAlignment
P56556 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.4e-0735.23Show/hide
Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII
        P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP+V+D+L+ KG  EL    +  KQR H++
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII

Q02366 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.3e-0834.09Show/hide
Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII
        P  S  + EA+ RV + +R+  R +P  ++++ LD   +  Q R  +    +KN+H+TDP+V+D+L+ KG  EL    +  KQR H++
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII

Q0MQA4 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.4e-0735.23Show/hide
Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII
        P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP+V+D+L+ KG  EL    +  KQR H++
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII

Q9CQZ5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 61.3e-0837.5Show/hide
Query:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII
        P  S  L EA+ RV + +R+  R +P  +++  LD   T  Q R  +     KN+HVTDP+V+D+L+ KG  EL    +  KQR H++
Subjt:  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHII

Q9LHI0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 63.7e-4870Show/hide
Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYV
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV

Query:  VGREGLVQDVGSKDQGISNFLKNFYKSNYF
        VG EGLVQ+ G+KDQG ++FLKNFY SNYF
Subjt:  VGREGLVQDVGSKDQGISNFLKNFYKSNYF

Arabidopsis top hitse value%identityAlignment
AT3G12260.1 LYR family of Fe/S cluster biogenesis protein2.7e-4970Show/hide
Query:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV
        F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYV
Subjt:  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV

Query:  VGREGLVQDVGSKDQGISNFLKNFYKSNYF
        VG EGLVQ+ G+KDQG ++FLKNFY SNYF
Subjt:  VGREGLVQDVGSKDQGISNFLKNFYKSNYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGC
AATCATGAACATCTATAACTTAGACGATGTCACTACTTCTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTG
ACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAATATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAA
GATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGA
mRNA sequenceShow/hide mRNA sequence
AGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCC
AACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTAC
TTCTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTA
ATATTACCGAACATGCAAAGCAACGGCATCACATCATCGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTT
CTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTT
CGCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGGCCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTA
TTT
Protein sequenceShow/hide protein sequence
MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQ
DVGSKDQGISNFLKNFYKSNYF