; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02055 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02055
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionThioredoxin-like protein YLS8
Genome locationCarg_Chr04:7802330..7803852
RNA-Seq ExpressionCarg02055
SyntenyCarg02055
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3794979.1 Thioredoxin-like protein [Nymphaea thermarum]2.6e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL+EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_004143618.1 thioredoxin-like protein YLS8 isoform X1 [Cucumis sativus]2.6e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_008361907.1 thioredoxin-like protein YLS8 isoform X2 [Malus domestica]3.4e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_022957086.1 thioredoxin-like protein YLS8 [Cucurbita moschata]6.8e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_030457658.1 thioredoxin-like protein YLS8 isoform X2 [Syzygium oleosum]4.4e-7697.89Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVV+IRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A4U5QS93 Thioredoxin-like protein YLS8 isoform X21.6e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A5A7STV6 Thioredoxin-like protein YLS8 isoform X21.6e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1CCM0 thioredoxin-like protein YLS8 isoform X21.2e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1GY92 thioredoxin-like protein YLS83.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1KK33 thioredoxin-like protein YLS81.2e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.5e-7185.92Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A1.5e-7185.92Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim15.4e-6174.65Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY LPHLHSGW VDQAIL+E+ER+V+IRFG D D+ C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE IDIIET++RGARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB12.3e-5166.67Show/hide
Query:  SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK
        S  LPHLHSGW VDQAI+TEEER+V+IRFG D D +CM MDE+L S+AE + NFA IY+ D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK
        +N+ + +KQE IDIIETV+RGAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS86.3e-7896.48Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+IL EEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP2.8e-2037.96Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT
        MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP
         ++ K   A   KQ+FID++E +YRGA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP4.5e-7996.48Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+IL EEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACCTGTTGCCGCATCTGCACTCAGGCTGGGCGGTGGATCAAGCAATCCTCACTGAAGAAGAACGCGTCGTCATCATCCGCTTCGGCCATGATTGGGACGACAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACG
AGCTCTATGATCCTTCTACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAA
GAGTTCATTGATATTATTGAGACTGTCTATCGTGGAGCAAGGAAAGGTCGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTACCTGTTGCCGCATCTGCACTCAGGCTGGGCGGTGGATCAAGCAATCCTCACTGAAGAAGAACGCGTCGTCATCATCCGCTTCGGCCATGATTGGGACGACAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACG
AGCTCTATGATCCTTCTACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCACTCAAGGATAAGCAA
GAGTTCATTGATATTATTGAGACTGTCTATCGTGGAGCAAGGAAAGGTCGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA
Protein sequenceShow/hide protein sequence
MSYLLPHLHSGWAVDQAILTEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFIDIIETVYRGARKGRGLVIAPKDYSTKYRY