CuGenDBv2

Gene ID	Carg02068
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit B
Genome location	Carg_Chr04:7730799..7734511
RNA-Seq Expression	Carg02068
Synteny	Carg02068
Gene Ontology terms	GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0016602 - CCAAT-binding factor complex (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain IPR009072 - Histone-fold IPR027113 - Transcription factor NFYB/HAP3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601043.1 hypothetical protein SDJN03_06276, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

KAG7031854.1 Nuclear transcription factor Y subunit B-10, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.5e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

XP_022957208.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata]

1.1e-46

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR  ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

XP_022957209.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita moschata]

3.5e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

XP_022999544.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita maxima]

3.5e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CB30 nuclear transcription factor Y subunit B-1-like isoform X3

5.4e-47

95.92

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFE+YIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGA+PGQNSQQYMQ GA+TYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

A0A6J1H1A7 nuclear transcription factor Y subunit B-1-like isoform X2

1.7e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

A0A6J1KDC7 nuclear transcription factor Y subunit B-1-like isoform X1

5.4e-47

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR  ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

A0A6J1KHE1 nuclear transcription factor Y subunit B-1-like isoform X2

1.7e-48

100

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

A0A6J1KK09 nuclear transcription factor Y subunit B-1-like isoform X3

5.4e-47

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR  ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYR--ECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

SwissProt top hits

e value

%identity

Alignment

Q5QMG3 Nuclear transcription factor Y subunit B-2

9.3e-20

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQKEKRKTING+DLL+AM TLGFEEY+DPLK YL +YRE   D+K SS+ GD S K+D +G   G +S     +  +    TQG   + P   N +
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

Q60EQ4 Nuclear transcription factor Y subunit B-3

4.2e-20

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+YI+PLK YL +YRE   D+K +++ GD S K+D +G+  G +S          Y   QG   + P   N +
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

Q67XJ2 Nuclear transcription factor Y subunit B-10

1.4e-23

62.24

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQ--QYMQSGALT---YINTQGQHLII
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+YIDPLK YL RYRE   D KGS +GG+ SAKRD     P Q SQ  Q  Q G+ +   Y N+QG ++++
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQ--QYMQSGALT---YINTQGQHLII

Q8VYK4 Nuclear transcription factor Y subunit B-8

2.4e-23

61.05

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+Y++PLK YL RYRE   D KGS++GGD +AK+D   +  GQ SQ   Q     Y N+Q  QH+++P
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP

Q9SLG0 Nuclear transcription factor Y subunit B-1

7.1e-20

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQ
        ASDKCQKEKRKT+NGDDLLWAMATLGFE+Y++PLK YL RYRE   D KGS + GD S  RDA G + G+
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G37060.1 nuclear factor Y, subunit B8

1.7e-24

61.05

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+Y++PLK YL RYRE   D KGS++GGD +AK+D   +  GQ SQ   Q     Y N+Q  QH+++P
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP

AT2G37060.2 nuclear factor Y, subunit B8

1.7e-24

61.05

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+Y++PLK YL RYRE   D KGS++GGD +AK+D   +  GQ SQ   Q     Y N+Q  QH+++P
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP

AT2G37060.3 nuclear factor Y, subunit B8

1.7e-24

61.05

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+Y++PLK YL RYRE   D KGS++GGD +AK+D   +  GQ SQ   Q     Y N+Q  QH+++P
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQG-QHLIIP

AT2G38880.7 nuclear factor Y, subunit B1

2.7e-22

72.06

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQ
        ASDKCQKEKRKT+NGDDLLWAMATLGFE+Y++PLK YL RYRE D KGS + GD S  RDA G + G+
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQ

AT3G53340.1 nuclear factor Y, subunit B10

9.8e-25

62.24

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Query:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQ--QYMQSGALT---YINTQGQHLII
        ASDKCQ+EKRKTINGDDLLWAMATLGFE+YIDPLK YL RYRE   D KGS +GG+ SAKRD     P Q SQ  Q  Q G+ +   Y N+QG ++++
Subjt:  ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYREC--DAKGSSRGGDESAKRDAVGAMPGQNSQ--QYMQSGALT---YINTQGQHLII

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

GCGAGTGACAAGTGCCAGAAGGAAAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAGTATATTGATCCGCTTAAGTCGTA
CCTTACTAGGTACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAATCTGCTAAAAGAGATGCAGTTGGGGCCATGCCTGGTCAAAATTCCCAGCAATACA
TGCAGTCGGGAGCGTTGACTTACATTAACACCCAAGGACAGCATTTGATCATTCCTTCAATGCAGAATAATGAATAGGAGTCACCTGCATCCCACTTGGATTGCCTGAAA
TCTGAGGCCGGTAGAAGCGTTCAACGCCTATATAGCATCTTTACAATCGATTTGACTAATTTATTATGATATGAGATGATATTGTAATCTATATTTTTGTGGTTTCTGTG
TTGGTTCTGGATTTGATTTTGGTTTGGGCTTTAAGGTGGGCTTCGATTTTATTGATGCTCTCGTCAGCTGAAGTTGTTGTAAAATTTGGGACCTTCAATTTAGTATAGTT
GCTTCAGTAATTTGAAAACTGGAAATATTATTCTCTTTCCAACTTCTGTTGCTTTTGCTTTAATGACACTGGTCTCAAATGACTAAGAAAGTGCTACATGTATCCTCTCC
TTCCCTTTTACCATGAA

Protein sequence

Show/hide protein sequence

ASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDAVGAMPGQNSQQYMQSGALTYINTQGQHLIIPSMQNNE

Carg02068 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome