; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02224 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02224
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription factor UPBEAT1-like
Genome locationCarg_Chr15:1352423..1352764
RNA-Seq ExpressionCarg02224
SyntenyCarg02224
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039441.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.1e-1859.66Show/hide
Query:  MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIV
        MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G++T          +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV
Subjt:  MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIV

Query:  LLKTQVVILQKLVDFFGSA
        +LKTQVVILQKLVDFFGSA
Subjt:  LLKTQVVILQKLVDFFGSA

KAG6578552.1 hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]8.6e-5199.12Show/hide
Query:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL
        MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENG+TTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL
Subjt:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL

Query:  QKLVDFFGSAVLS
        QKLVDFFGSAVLS
Subjt:  QKLVDFFGSAVLS

KAG7016112.1 hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-51100Show/hide
Query:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL
        MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL
Subjt:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVIL

Query:  QKLVDFFGSAVLS
        QKLVDFFGSAVLS
Subjt:  QKLVDFFGSAVLS

XP_011098783.1 uncharacterized protein LOC105177360 [Sesamum indicum]5.7e-1054.26Show/hide
Query:  KRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS
        + S P + RR  RR  ++ R P     G   +SS        VS KLEAL+SLIP+Q AE  + EQLFKETADYIVLLKTQV++LQKLVDF+G+
Subjt:  KRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS

XP_022993697.1 uncharacterized protein LOC111489609 [Cucurbita maxima]2.7e-3682.2Show/hide
Query:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFS-----DDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKT
        M+PKT TLTNLRT TKRSLPD          SAVRAPNPHE GETTSSSP S     DDDDDVSAKLEALQSLIPAQSAE RQTEQLFKETADYIVLLKT
Subjt:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFS-----DDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKT

Query:  QVVILQKLVDFFGSAVLS
        QVVILQKLVDFFGSAVLS
Subjt:  QVVILQKLVDFFGSAVLS

TrEMBL top hitse value%identityAlignment
A0A1J6IM95 Uncharacterized protein5.2e-0958.21Show/hide
Query:  ETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA
        ++ ++S   DD   +S KLEAL+ LIPA + E  + +QLF+ETADYIVLLKTQV +LQKLVDF+GS+
Subjt:  ETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA

A0A2P5AW87 Transcription factor UPBEAT-like protein6.8e-0949.02Show/hide
Query:  TNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFG
        TN+R T +R      R+   R   A R+ N   NG  T SS        VS KLEAL+ LIP    E  +T+QLF++TADYIVLL+TQVV+LQKL++F+G
Subjt:  TNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFG

Query:  SA
        SA
Subjt:  SA

A0A5D3BNP5 Transcription factor UPBEAT1-like5.5e-1959.66Show/hide
Query:  MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIV
        MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G++T          +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV
Subjt:  MSPKTNTLTN-----LRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIV

Query:  LLKTQVVILQKLVDFFGSA
        +LKTQVVILQKLVDFFGSA
Subjt:  LLKTQVVILQKLVDFFGSA

A0A6I9UIV7 uncharacterized protein LOC1051773602.7e-1054.26Show/hide
Query:  KRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS
        + S P + RR  RR  ++ R P     G   +SS        VS KLEAL+SLIP+Q AE  + EQLFKETADYIVLLKTQV++LQKLVDF+G+
Subjt:  KRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGS

A0A6J1JTK8 uncharacterized protein LOC1114896091.3e-3682.2Show/hide
Query:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFS-----DDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKT
        M+PKT TLTNLRT TKRSLPD          SAVRAPNPHE GETTSSSP S     DDDDDVSAKLEALQSLIPAQSAE RQTEQLFKETADYIVLLKT
Subjt:  MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFS-----DDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKT

Query:  QVVILQKLVDFFGSAVLS
        QVVILQKLVDFFGSAVLS
Subjt:  QVVILQKLVDFFGSAVLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein3.1e-0638.95Show/hide
Query:  RSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQ-SAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA
        R+L     R  RR   + R    H    T   +  SD    V  KL AL+SL+P   +  G +TE+LF+ETA+YIV L+TQVV+L+KL++ + ++
Subjt:  RSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQ-SAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA

AT5G39240.1 unknown protein1.3e-0749.25Show/hide
Query:  SAKLEALQSLIPAQS---AEGRQ------------TEQLFKETADYIVLLKTQVVILQKLVDFFGSA
        S KL+AL+SL+P  S    + RQ            TEQLF+ETADYIV L+ QVV+LQKL++ +GS+
Subjt:  SAKLEALQSLIPAQS---AEGRQ------------TEQLFKETADYIVLLKTQVVILQKLVDFFGSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCCCAAAACCAACACACTCACAAACCTCCGAACTACAACCAAACGATCTCTACCTGACTCCCGCCGACGCTTCCACCGCCGTCACTACTCCGCCGTCCGAGCTCC
TAATCCCCACGAAAATGGCGAAACGACGTCGTCTTCGCCCTTCTCCGACGACGATGACGACGTGTCGGCCAAGTTGGAGGCTCTTCAGAGCCTCATTCCGGCCCAATCCG
CCGAGGGCCGCCAAACAGAGCAGCTCTTCAAGGAAACTGCTGATTACATTGTTCTATTGAAAACCCAGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCC
GTCCTTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCCCAAAACCAACACACTCACAAACCTCCGAACTACAACCAAACGATCTCTACCTGACTCCCGCCGACGCTTCCACCGCCGTCACTACTCCGCCGTCCGAGCTCC
TAATCCCCACGAAAATGGCGAAACGACGTCGTCTTCGCCCTTCTCCGACGACGATGACGACGTGTCGGCCAAGTTGGAGGCTCTTCAGAGCCTCATTCCGGCCCAATCCG
CCGAGGGCCGCCAAACAGAGCAGCTCTTCAAGGAAACTGCTGATTACATTGTTCTATTGAAAACCCAGGTCGTCATTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCC
GTCCTTTCATAG
Protein sequenceShow/hide protein sequence
MSPKTNTLTNLRTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDDDDVSAKLEALQSLIPAQSAEGRQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA
VLS