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Carg02256 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02256
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE6-like
Genome locationCarg_Chr15:1499882..1500531
RNA-Seq ExpressionCarg02256
SyntenyCarg02256
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016144.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-40100Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

XP_004151201.2 transcription factor PRE6 [Cucumis sativus]1.4e-3592.31Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]2.1e-3998.9Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

XP_022993701.1 transcription factor PRE6-like [Cucurbita maxima]2.3e-3896.7Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]7.0e-3590.11Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS+RRSR S ASRI+DDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTID+DS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator6.8e-3692.31Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE66.8e-3692.31Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE66.8e-3692.31Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS+RRSR S ASRISDDQII+L+SKLRQLVPEIRHRRPDKVSASKVL ETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like1.0e-3998.9Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

A0A6J1JX29 transcription factor PRE6-like1.1e-3896.7Show/hide
Query:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MSTRRSRHSG SRISDDQII+LLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDS EAAIIRSLIMQ
Subjt:  MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.2e-2466.3Show/hide
Query:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM
        MS+R  RSR SG+SRI+D+QI DL+SKL+ L+PE R R  D+V +S+VL ETCNYIR+LH+EVDDLSERLS+LL+T D  S +AAIIRSL+M
Subjt:  MSTR--RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM

Q8GW32 Transcription factor PRE63.5e-2973.91Show/hide
Query:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI
        MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNLHREVDDLS+RLS+LL++ D +S EAAIIRSL+
Subjt:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI

Q9FLE9 Transcription factor PRE13.9e-2873.91Show/hide
Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM
        MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM

Q9LJX1 Transcription factor PRE53.5e-2976.09Show/hide
Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM
        MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LHREVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM

Q9LXG5 Transcription factor PRE21.1e-2571.11Show/hide
Query:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI
        S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++E DDLS+RL+QLL +ID +SP+AA+IRSLI
Subjt:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.5e-3073.91Show/hide
Query:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI
        MS+R   RSR SG+SRISDDQI DL+SKL+ L+PE+R RR DKVSASKVL ETCNYIRNLHREVDDLS+RLS+LL++ D +S EAAIIRSL+
Subjt:  MSTR---RSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.1e-2567.37Show/hide
Query:  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ
        MS RRSR    SG SRIS+DQI DL+ KL+QL+PE+R  RR DKVSA++VL +TCNYIRNLHREVDDLSERLS+LL+  +SD+ +AA+IRSL+ Q
Subjt:  MSTRRSR---HSGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.5e-3076.09Show/hide
Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM
        MS RRSR  S ASRISDDQ+IDL+SKLRQ +PEI   RR DKVSASKVL ETCNYIR LHREVD+LS+RLSQLL ++D DSPEAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM

AT5G15160.1 BANQUO 27.5e-2771.11Show/hide
Query:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI
        S+RRSR  S +SRISDDQI DL+SKLRQ +PEIR +RR + VSASKVL ETCNYIRNL++E DDLS+RL+QLL +ID +SP+AA+IRSLI
Subjt:  STRRSRH-SGASRISDDQIIDLLSKLRQLVPEIR-HRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.7e-2973.91Show/hide
Query:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM
        MS RRSR  S A RISD+Q+IDL+SKLRQ++PEI + RR DK SASKVL ETCNYIRNL+REVD+LSERLSQLL ++D DSPEAA+IRSL+M
Subjt:  MSTRRSRH-SGASRISDDQIIDLLSKLRQLVPEI-RHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAATCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCG
CCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACCTGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTA
CAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
CCAACACCTTTCCTACTCCAACTGCCTCTCCATCTTCAACTCCACATAACCTTCAACCTCACTCACCAACATGTCCACCAGAAGATCAAGGCACTCAGGCGCTTCAAGAA
TCAGCGATGACCAAATCATCGACCTCCTCTCCAAGCTCCGTCAACTCGTCCCCGAGATTCGCCACCGCCGCCCCGACAAGGTATCAGCTTCAAAAGTCCTCCATGAAACC
TGCAATTACATTAGAAACTTGCATAGGGAGGTGGATGACCTAAGTGAAAGACTCTCTCAGCTCTTATCTACAATAGATTCTGATAGCCCAGAGGCAGCCATCATCAGGAG
CTTAATTATGCAATAGAACAAGAACAAGAACAAGAACAAGAACAACGGTGTCGGGTTTGGTATTGATATATATATATATTATTATTATTTATATC
Protein sequenceShow/hide protein sequence
MSTRRSRHSGASRISDDQIIDLLSKLRQLVPEIRHRRPDKVSASKVLHETCNYIRNLHREVDDLSERLSQLLSTIDSDSPEAAIIRSLIMQ