CuGenDBv2

Gene ID	Carg02276
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	metalloendoproteinase 2-MMP-like
Genome location	Carg_Chr15:1607752..1608553
RNA-Seq Expression	Carg02276
Synteny	Carg02276
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0030198 - extracellular matrix organization (biological process) GO:0030574 - collagen catabolic process (biological process) GO:0031012 - extracellular matrix (cellular component) GO:0031225 - anchored component of membrane (cellular component) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR024079 - Metallopeptidase, catalytic domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037429.1 metalloendoproteinase 2-MMP-like [Cucumis melo var. makuwa]

1.0e-19

81.36

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADII+G++GMKSGK +VN+HRK  GHFH+VSHF FF+GNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY

KAG6578617.1 Metalloendoproteinase 2-MMP, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-26

95.16

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINH
        MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY  +H
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINH

KAG7016164.1 Metalloendoproteinase 3-MMP, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.2e-30

100

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINHYF
        MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINHYF
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINHYF

XP_022939137.1 metalloendoproteinase 2-MMP-like [Cucurbita moschata]

5.4e-26

100

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY

XP_023551531.1 metalloendoproteinase 2-MMP-like [Cucurbita pepo subsp. pepo]

4.6e-25

96.55

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADIIDGKSGMKSG NMVNQHRKSGHFH+VSHFTFFKGNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KS47 ZnMc domain-containing protein

1.1e-19

81.36

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADII+GK+ MKSGK  VNQHRK SGHFH+VSHF FF+GNL+WP+SKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY

A0A1S3C925 metalloendoproteinase 2-MMP-like

4.8e-20

81.36

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADII+G++GMKSGK +VN+HRK  GHFH+VSHF FF+GNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY

A0A5A7T7T1 Metalloendoproteinase 2-MMP-like

4.8e-20

81.36

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADII+G++GMKSGK +VN+HRK  GHFH+VSHF FF+GNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY

A0A5D3BMC5 Metalloendoproteinase 2-MMP-like

1.6e-18

81.36

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADIIDGK+ MKSGK MVNQHRK +GHFH VSH+ FF GN KWP SKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRK-SGHFHQVSHFTFFKGNLKWPNSKSHLTY

A0A6J1FFZ1 metalloendoproteinase 2-MMP-like

2.6e-26

100

Show/hide

Query:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
        MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
Subjt:  MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY

SwissProt top hits

e value

%identity

Alignment

O04529 Metalloendoproteinase 2-MMP

3.6e-04

35.59

Show/hide

Query:  PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN
        PRCG  D+++G S M  G+    +   S  H H V  +T F G  +WP ++  LTY  +
Subjt:  PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN

Q5XF51 Metalloendoproteinase 3-MMP

5.0e-06

38.33

Show/hide

Query:  PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN
        PRCG  D+++G S M SG+    V+   +   FH V H++FF G  +WP ++  LTY  +
Subjt:  PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN

Arabidopsis top hits

e value

%identity

Alignment

AT1G24140.1 Matrixin family protein

3.5e-07

38.33

Show/hide

Query:  PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN
        PRCG  D+++G S M SG+    V+   +   FH V H++FF G  +WP ++  LTY  +
Subjt:  PRCGVADIIDGKSGMKSGKNM--VNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVIN

AT1G59970.1 Matrixin family protein

1.6e-04

39.29

Show/hide

Query:  KPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY
        KPRCG  D+IDG S M  GK +               ++FF G  +WP  K  LTY
Subjt:  KPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTY

AT1G70170.1 matrix metalloproteinase

2.5e-05

35.59

Show/hide

Query:  PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN
        PRCG  D+++G S M  G+    +   S  H H V  +T F G  +WP ++  LTY  +
Subjt:  PRCGVADIIDGKSGMKSGKNMVNQHRKS-GHFHQVSHFTFFKGNLKWPNSKSHLTYVIN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGAAACCTCGATGCGGGGTTGCGGATATCATCGACGGCAAGAGTGGGATGAAATCAGGCAAGAATATGGTGAATCAACATAGAAAAAGTGGTCATTTCCATCAAGT
TTCTCATTTTACTTTCTTCAAAGGAAACCTTAAATGGCCTAATTCCAAGTCTCACCTCACTTATGTAATTAATCATTATTTT

mRNA sequence

Show/hide mRNA sequence

AAACTTACCAAATCAACTACAATCTCAAGGCCACCGGAGCTCTCGACGCCACGACGCTGGCTCAAATGTCGAAACCTCGATGCGGGGTTGCGGATATCATCGACGGCAAG
AGTGGGATGAAATCAGGCAAGAATATGGTGAATCAACATAGAAAAAGTGGTCATTTCCATCAAGTTTCTCATTTTACTTTCTTCAAAGGAAACCTTAAATGGCCTAATTC
CAAGTCTCACCTCACTTATGTAATTAATCATTATTTT

Protein sequence

Show/hide protein sequence

MSKPRCGVADIIDGKSGMKSGKNMVNQHRKSGHFHQVSHFTFFKGNLKWPNSKSHLTYVINHYF

Carg02276 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome