CuGenDBv2

Gene ID	Carg02440
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SHUGOSHIN 2-like isoform X1
Genome location	Carg_Chr15:2414427..2418808
RNA-Seq Expression	Carg02440
Synteny	Carg02440
Gene Ontology terms	GO:0034090 - maintenance of meiotic sister chromatid cohesion (biological process) GO:0000775 - chromosome, centromeric region (cellular component) GO:0005634 - nucleus (cellular component)
InterPro domains	IPR044693 - Shugoshin, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016323.1 SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-162

100

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Query:  MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELL
        MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELL
Subjt:  MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELL

Query:  NLNKNNRKNKTRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQP
        NLNKNNRKNKTRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQP
Subjt:  NLNKNNRKNKTRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQP

Query:  VLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI
        VLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI
Subjt:  VLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI

KAG7016325.1 SHUGOSHIN 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-64

90.97

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Query:  NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYV
        NSVLPKIRRSSRKILGFNHRVSNMECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQK DT QQSSLLKTYEYV
Subjt:  NSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYV

Query:  DKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLAL
        DKLQKENMALTKVLAERN IIEIS NELETLRTNFQKLQQQNLQFAQANSQMLA+
Subjt:  DKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLAL

XP_023550311.1 SHUGOSHIN 2-like isoform X1 [Cucurbita pepo subsp. pepo]

4.6e-59

84.81

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN    S++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

XP_023550313.1 SHUGOSHIN 2-like isoform X3 [Cucurbita pepo subsp. pepo]

4.6e-59

84.81

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN    S++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

XP_023550314.1 SHUGOSHIN 2-like isoform X4 [Cucurbita pepo subsp. pepo]

4.6e-59

84.81

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MECSISLD KNYGVG +      QNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN    S++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1JRF5 SHUGOSHIN 2-like isoform X5

4.6e-57

81.65

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQK DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN   MS++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

A0A6J1JX72 SHUGOSHIN 2-like isoform X1

4.6e-57

81.65

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQK DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN   MS++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

A0A6J1JX77 SHUGOSHIN 2-like isoform X3

4.6e-57

81.65

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQK DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN   MS++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

A0A6J1JYY1 SHUGOSHIN 2-like isoform X7

4.6e-57

81.65

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQK DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN   MS++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

A0A6J1K0U1 SHUGOSHIN 2-like isoform X6

4.6e-57

81.65

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Query:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
        MEC+ SLD KNYGVG +      QNMEIAGVKTMKSSKVGG+QRKRLSDISNLKEQP+LQK DTK QSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI
Subjt:  MECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEI

Query:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        SGNELETLRTNFQKLQQQNLQFAQANSQMLA        LK LQHELGCKN   MS++
Subjt:  SGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

SwissProt top hits

e value

%identity

Alignment

E3VXF2 Shugoshin-1

3.8e-08

48.68

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Query:  KENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSK
        KEN  L  +LAERN++IE+S  EL+ +R   Q +QQ+NLQ  QANSQM A        +K LQHEL C  A    K
Subjt:  KENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSK

F4J3S1 SHUGOSHIN 1

2.5e-15

42.54

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Query:  GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANS
        G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+
Subjt:  GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANS

Query:  QMLA--------LKDLQHELGCKNAFFMSKEKLI
        ++LA        LK LQHELGCKN   M+++ L+
Subjt:  QMLA--------LKDLQHELGCKNAFFMSKEKLI

Q0WTB8 SHUGOSHIN 2

8.2e-19

47.62

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Query:  SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA---
        S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA RN+++E+SG E++ LR N + +Q++NLQ AQANSQMLA   
Subjt:  SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA---

Query:  -----LKDLQHELGCKNAFFMSKEKL
             LKDLQHELGCKNA    K+ L
Subjt:  -----LKDLQHELGCKNAFFMSKEKL

Q4QSC8 Shugoshin-1

1.0e-05

42.68

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Query:  VDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE
        V  L KEN  L  +L E+ +II++S  E+  LR   Q  +QQNL   Q NSQMLA        +K LQHEL C  A    K+
Subjt:  VDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKE

Arabidopsis top hits

e value

%identity

Alignment

AT3G10440.1 Shugoshin C terminus

1.7e-16

42.54

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Query:  GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANS
        G K +    +  AQR++L DI+NL+ Q  L     K  QQ+ L+ + E  + LQKEN  L KV+ ER+ I     ++L+ LR  FQK+Q+QNL  AQAN+
Subjt:  GVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTK--QQSSLLKTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANS

Query:  QMLA--------LKDLQHELGCKNAFFMSKEKLI
        ++LA        LK LQHELGCKN   M+++ L+
Subjt:  QMLA--------LKDLQHELGCKNAFFMSKEKLI

AT5G04320.1 Shugoshin C terminus

2.1e-14

55.26

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Query:  MALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKEKL
        M L K LA RN+++E+SG E++ LR N + +Q++NLQ AQANSQMLA        LKDLQHELGCKNA    K+ L
Subjt:  MALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA--------LKDLQHELGCKNAFFMSKEKL

AT5G04320.2 Shugoshin C terminus

5.8e-20

47.62

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Query:  SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA---
        S++V G+Q+       N+K+   + K +T+Q+ ++L  + EY  KLQKENM L K LA RN+++E+SG E++ LR N + +Q++NLQ AQANSQMLA   
Subjt:  SSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLL-KTYEYVDKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLA---

Query:  -----LKDLQHELGCKNAFFMSKEKL
             LKDLQHELGCKNA    K+ L
Subjt:  -----LKDLQHELGCKNAFFMSKEKL

Sequences

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CDS sequence

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ATGCCGGCCAATTCCCGGCCACAACCCCCCGGGGGAGGGGAAGTTTCGTTTGGCGGAATTAAATATCTCAGCAAGAGCATTTGGGGGCCCAAGTTTTTCTACTCAGAGTT
AGACGAGAACAATCGCGATAGGCTTCCATTTGACAGGAACTGGATTGACTATCGAATTAACCGTGACCCATTGCCTCCGGCGAAAGTAGCCATGGCAGGAGGAGGCAGAG
ATGAGCTCAAAACCCAGATGAAGAACAGAATGCCAGTGGTAGCAAACATATCTGCTTCTAAATTTGGTTGGGAACTGCTTAATCTGAACAAGAACAACAGGAAGAACAAG
ACAAGAAACAGAACAGACTCACTTTCATGTAACTCTGTCCTTCCCAAGATCCGTCGTTCGAGCAGAAAGATTTTAGGATTCAACCATAGAGTCTCCAACATGGAGTGTAG
CATTTCGCTCGATTTGAAGAACTACGGTGTTGGAGTGACTGGAAATTTGGTTTTTGGTCAAAACATGGAAATAGCTGGAGTGAAAACGATGAAGAGCTCCAAAGTAGGAG
GCGCCCAGAGGAAACGGCTTTCCGATATAAGCAACTTGAAGGAGCAACCTGTACTGCAGAAGGGAGATACGAAGCAGCAGTCTAGTTTGCTTAAGACCTATGAATATGTT
GATAAGTTACAGAAGGAAAATATGGCACTTACGAAGGTTCTTGCAGAAAGAAATCGTATAATTGAGATAAGTGGAAATGAGTTAGAGACATTAAGAACCAATTTTCAGAA
ATTGCAGCAGCAGAATCTGCAATTCGCCCAAGCAAACAGTCAAATGTTAGCGCTGAAAGACCTTCAACACGAGCTTGGATGTAAAAATGCATTCTTTATGTCGAAGGAAA
AACTGATTTGA

mRNA sequence

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Protein sequence

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MPANSRPQPPGGGEVSFGGIKYLSKSIWGPKFFYSELDENNRDRLPFDRNWIDYRINRDPLPPAKVAMAGGGRDELKTQMKNRMPVVANISASKFGWELLNLNKNNRKNK
TRNRTDSLSCNSVLPKIRRSSRKILGFNHRVSNMECSISLDLKNYGVGVTGNLVFGQNMEIAGVKTMKSSKVGGAQRKRLSDISNLKEQPVLQKGDTKQQSSLLKTYEYV
DKLQKENMALTKVLAERNRIIEISGNELETLRTNFQKLQQQNLQFAQANSQMLALKDLQHELGCKNAFFMSKEKLI

Carg02440 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome