CuGenDBv2

Gene ID	Carg02460
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Altered inheritance of mitochondria protein 24, mitochondrial
Genome location	Carg_Chr02:8610589..8612834
RNA-Seq Expression	Carg02460
Synteny	Carg02460
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR002838 - Mitochondrial biogenesis protein AIM24 IPR016031 - Tryptophan RNA-binding attenuator protein-like domain superfamily IPR036983 - Mitochondrial biogenesis AIM24 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606166.1 hypothetical protein SDJN03_03483, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-89

99.41

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

KAG7036110.1 hypothetical protein SDJN02_02910, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-90

100

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

XP_022957925.1 uncharacterized protein LOC111459315 isoform X1 [Cucurbita moschata]

2.4e-89

98.82

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

XP_022957927.1 uncharacterized protein LOC111459315 isoform X3 [Cucurbita moschata]

2.4e-89

98.82

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

XP_022996173.1 uncharacterized protein LOC111491483 isoform X1 [Cucurbita maxima]

3.2e-89

98.24

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMEN+FLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E2Y5 Altered inheritance of mitochondria protein 24, mitochondrial

1.9e-84

92.35

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSG+IEMENVFLPENEVGVWHWLFGKSVTSI+LRNSGTS+GYVG+AAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKV +
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        T  HRVRNV T VEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVL+VDISCI+AMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

A0A6J1H0I4 Altered inheritance of mitochondria protein 24, mitochondrial

1.2e-89

98.82

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

A0A6J1H205 Altered inheritance of mitochondria protein 24, mitochondrial

1.2e-89

98.82

Show/hide

Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

A0A6J1K3Z3 Altered inheritance of mitochondria protein 24, mitochondrial

1.5e-89

98.24

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMEN+FLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

A0A6J1KA37 Altered inheritance of mitochondria protein 24, mitochondrial

1.5e-89

98.24

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIARPGSMCFMSGSIEMEN+FLPENEVGVWHWLFGKSVTSIILRNSGTS+GYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
        TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSV QKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV
Subjt:  TAYHRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G17420.1 Tryptophan RNA-binding attenuator protein-like

1.6e-67

70.59

Show/hide

Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIA+PGSMC+MSGSIEM+N + PE EVGV  W+ GKSV+SI+LRN+G ++G+VG+AAPSLARILP+D+AMFGG++LCQPDAFLCSV+DVKV +
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAY--HRVRNVTTS-VEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN
        T Y  HR RN+  +  EG LRQ+LSGQGLAFI+ GGSV QKNLEVGEVL++D+SCI A+T +I+ QIKYN
Subjt:  TAY--HRVRNVTTS-VEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN

AT4G17420.2 Tryptophan RNA-binding attenuator protein-like

1.7e-61

65.68

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIA+PGSMC+MSGSIEM+N + PE EVGV  W+ GKSV+SI+LRN+G ++G+VG+AAPSLARILP+D+AMFGG++LCQPDAFLCSV+DVKV +
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAY--HRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN
        T Y  HR RN+  +           +GLAFI+ GGSV QKNLEVGEVL++D+SCI A+T +I+ QIKYN
Subjt:  TAY--HRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN

AT4G17420.3 Tryptophan RNA-binding attenuator protein-like

1.7e-61

65.68

Show/hide

Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLKPQEKVIA+PGSMC+MSGSIEM+N + PE EVGV  W+ GKSV+SI+LRN+G ++G+VG+AAPSLARILP+D+AMFGG++LCQPDAFLCSV+DVKV +
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAY--HRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN
        T Y  HR RN+  +           +GLAFI+ GGSV QKNLEVGEVL++D+SCI A+T +I+ QIKYN
Subjt:  TAY--HRVRNVTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYN

AT5G47420.1 Tryptophan RNA-binding attenuator protein-like

3.4e-65

69.41

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Query:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD
        MLK +EKVIA+P SMC+MSGSIEMEN + PE EVGV  W+ GKSV+S++LRN+G ++G+VG+AAP LARILPID+AMFGGE+LCQPDAFLCSV+DVKV +
Subjt:  MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTD

Query:  TAYHRVRN-VTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGP
        +   R RN V    EGFLRQ+LSGQGLAFIL GGSV QK LEVGEV S+D+SCI A+T +IDV+IK N P
Subjt:  TAYHRVRN-VTTSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTGAAGCCACAAGAGAAAGTTATTGCAAGGCCTGGCTCCATGTGCTTCATGTCTGGGTCTATTGAGATGGAAAATGTTTTTCTCCCCGAAAATGAAGTGGGTGTTTG
GCATTGGCTATTTGGCAAGAGTGTCACTAGCATCATTCTTCGGAATTCCGGTACAAGTGAGGGATATGTTGGAGTTGCTGCACCTTCTCTTGCTAGGATTCTCCCGATTG
ATATGGCAATGTTTGGTGGAGAGCTTCTATGCCAGCCAGATGCATTCCTTTGCTCTGTTAATGATGTTAAGGTTACCGACACAGCTTATCACAGAGTACGCAATGTTACC
ACAAGTGTGGAGGGGTTTCTTAGACAGAAGTTATCAGGCCAAGGGCTCGCTTTCATTCTTGGAGGTGGATCTGTCGCACAGAAAAATCTCGAGGTTGGTGAAGTACTATC
AGTGGATATCTCCTGCATTCTGGCTATGACCACCACCATTGATGTCCAAATCAAATACAATGGTCCTGTG

mRNA sequence

Show/hide mRNA sequence

ACAAGACGCAGTGATACCTTTTCAGATTTTGGGTGGTGAAGCCCAAGTAGTACAGATAATGCTGAAGCCACAAGAGAAAGTTATTGCAAGGCCTGGCTCCATGTGCTTCA
TGTCTGGGTCTATTGAGATGGAAAATGTTTTTCTCCCCGAAAATGAAGTGGGTGTTTGGCATTGGCTATTTGGCAAGAGTGTCACTAGCATCATTCTTCGGAATTCCGGT
ACAAGTGAGGGATATGTTGGAGTTGCTGCACCTTCTCTTGCTAGGATTCTCCCGATTGATATGGCAATGTTTGGTGGAGAGCTTCTATGCCAGCCAGATGCATTCCTTTG
CTCTGTTAATGATGTTAAGGTTACCGACACAGCTTATCACAGAGTACGCAATGTTACCACAAGTGTGGAGGGGTTTCTTAGACAGAAGTTATCAGGCCAAGGGCTCGCTT
TCATTCTTGGAGGTGGATCTGTCGCACAGAAAAATCTCGAGGTTGGTGAAGTACTATCAGTGGATATCTCCTGCATTCTGGCTATGACCACCACCATTGATGTCCAAATC
AAATACAATGGTCCTGTG

Protein sequence

Show/hide protein sequence

MLKPQEKVIARPGSMCFMSGSIEMENVFLPENEVGVWHWLFGKSVTSIILRNSGTSEGYVGVAAPSLARILPIDMAMFGGELLCQPDAFLCSVNDVKVTDTAYHRVRNVT
TSVEGFLRQKLSGQGLAFILGGGSVAQKNLEVGEVLSVDISCILAMTTTIDVQIKYNGPV

Carg02460 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome