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Carg02478 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02478
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein cornichon homolog 4-like
Genome locationCarg_Chr02:8520437..8522098
RNA-Seq ExpressionCarg02478
SyntenyCarg02478
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0009536 - plastid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003377 - Cornichon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028361.1 Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma]5.2e-2860.8Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQS
        M D+YVWL+SFFF+IALLI++++QLMCLADLEFDYINPYDS+SRINKV+ PEFI+ GVL L Y++       +LC  P + +  V +  AP  CYRDIQ 
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQS

Query:  VTLGKEAKAFQTRLSYFSSLSLHIL
          LGKEA AFQT LS F  L L IL
Subjt:  VTLGKEAKAFQTRLSYFSSLSLHIL

KAG7036092.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-61100Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEA
        MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEA
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEA

Query:  KAFQTRLSYFSSLSLHILVDLQCVGGS
        KAFQTRLSYFSSLSLHILVDLQCVGGS
Subjt:  KAFQTRLSYFSSLSLHILVDLQCVGGS

XP_021613096.1 protein cornichon homolog 4-like isoform X2 [Manihot esculenta]2.5e-3058.33Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQS
        M D+YVWL+SFFF+IAL++++VFQLMCLADLEFDYINPYDSSSRINKV++PE+IT+GVL L Y++       LLC  P L + + H   A G C  DIQ 
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDIQS

Query:  VTLGKEAKAFQTRLSYFSSLSLHILVDLQCVG
         +LGK+A  FQT LS+F  LS + L D  C+G
Subjt:  VTLGKEAKAFQTRLSYFSSLSLHILVDLQCVG

XP_022996131.1 protein cornichon homolog 4-like [Cucurbita maxima]1.2e-2192.31Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

XP_023532889.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo]1.2e-2192.31Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

TrEMBL top hitse value%identityAlignment
A0A0A0KMS0 Uncharacterized protein1.0e-2176.19Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKI
        MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL + Y++       LLC +P L + +
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKI

A0A1S3ATW1 protein cornichon homolog 4-like1.0e-2176.19Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKI
        MADIYVWLLSFFFIIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL + Y++       LLC +P L + +
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKI

A0A5D2K0F7 Uncharacterized protein2.3e-2161.22Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDI
        M D+++WL SFF ++ALLI++V+QL+CLADLEFDYINPYDSSSRINKVV+PEFI +G L   Y++       LLCA P L + + HS  APG CYRDI
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQFKIVHSAKAPGGCYRDI

A0A6J1H2W0 protein cornichon homolog 4-like7.8e-2290.77Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVL + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

A0A6J1K131 protein cornichon homolog 4-like6.0e-2292.31Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVL + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

SwissProt top hitse value%identityAlignment
Q3EDD7 Probable protein cornichon homolog 27.1e-1262.3Show/hide
Query:  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF
        +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L +
Subjt:  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF

Q84W04 Protein cornichon homolog 43.0e-1862.2Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF
        M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L +
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF

Q8GWT5 Protein cornichon homolog 34.9e-1358.46Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

Q9C7D7 Protein cornichon homolog 16.0e-1146.05Show/hide
Query:  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL------DYVILLCALPL
        D+++W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L L       +V  L A+P+
Subjt:  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL------DYVILLCALPL

Q9SZ74 Protein cornichon homolog 59.9e-1458.46Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L L Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

Arabidopsis top hitse value%identityAlignment
AT1G12340.1 Cornichon family protein5.0e-1362.3Show/hide
Query:  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF
        +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L +
Subjt:  VFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF

AT1G12390.1 Cornichon family protein2.1e-1962.2Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF
        M DI+ WL+SFFF+IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVL + Y++       LLC LP L +
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI-------LLCALPLLQF

AT1G62880.1 Cornichon family protein3.5e-1458.46Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        M +++ W++SF  +I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG L + Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI

AT3G12180.1 Cornichon family protein4.3e-1246.05Show/hide
Query:  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL------DYVILLCALPL
        D+++W++SFF  +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG L L       +V  L A+P+
Subjt:  DIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLAL------DYVILLCALPL

AT4G12090.1 Cornichon family protein7.0e-1558.46Show/hide
Query:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI
        M D+  W++SF F+  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+L L Y++
Subjt:  MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATATCTACGTCTGGCTCCTCTCTTTCTTCTTTATCATTGCGCTTCTCATACTCGTCGTTTTCCAGCTGATGTGCTTAGCTGATCTTGAGTTTGATTATATCAA
TCCTTATGATTCCTCATCACGAATAAACAAAGTGGTGGTACCTGAGTTCATCACCCAAGGAGTCTTGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTAC
AATTTAAGATTGTACACTCAGCGAAAGCACCTGGTGGATGTTACCGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCGAAGGCTTTTCAAACTCGTCTATCTTATTTC
TCTTCTCTTTCTCTCCATATTTTGGTTGATTTACAGTGCGTTGGAGGATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATATCTACGTCTGGCTCCTCTCTTTCTTCTTTATCATTGCGCTTCTCATACTCGTCGTTTTCCAGCTGATGTGCTTAGCTGATCTTGAGTTTGATTATATCAA
TCCTTATGATTCCTCATCACGAATAAACAAAGTGGTGGTACCTGAGTTCATCACCCAAGGAGTCTTGGCATTGGATTATGTCATTCTTTTGTGTGCCCTACCTCTATTAC
AATTTAAGATTGTACACTCAGCGAAAGCACCTGGTGGATGTTACCGAGATATTCAATCAGTTACCTTGGGAAAAGAAGCGAAGGCTTTTCAAACTCGTCTATCTTATTTC
TCTTCTCTTTCTCTCCATATTTTGGTTGATTTACAGTGCGTTGGAGGATCATGATTCTTGAATAGGAATAACAGAGCTGCAAATTGTTGTCTAGTAGGAGATAATGCCAC
TGTGCGACTCACTACAAAGTTTGGTGTTCTTTACTCGTAGGGTATCTTATTGTGTTGTAATTCTGGACAAATGATTGCCTCGTGAGTAACATCTAAAGGGGTTTTCTTTT
TTCTTCTTGATTGCCACTAAATGCTGCCCCTGTTTTGCATTTATGTTTGTAAACAAAATTTGGAAACTATATTTATATGATTCTTATTTCTTGTACC
Protein sequenceShow/hide protein sequence
MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLALDYVILLCALPLLQFKIVHSAKAPGGCYRDIQSVTLGKEAKAFQTRLSYF
SSLSLHILVDLQCVGGS