CuGenDBv2

Gene ID	Carg02486
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S13
Genome location	Carg_Chr02:8481373..8482150
RNA-Seq Expression	Carg02486
Synteny	Carg02486
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-72

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]

2.5e-71

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]

2.5e-71

98.57

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]

4.9e-72

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]

1.1e-71

99.29

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMS8 Ribosomal_S13_N domain-containing protein

1.2e-71

98.57

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A1S3ATA6 40S ribosomal protein S13-like

1.2e-71

98.57

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1DVX9 40S ribosomal protein S13-like

1.2e-71

98.57

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1E411 40S ribosomal protein S13-like

2.4e-72

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1HYG9 40S ribosomal protein S13-like

2.4e-72

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

5.3e-69

92.14

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-1

1.2e-68

91.43

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-2

3.1e-69

92.14

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S13

7.9e-73

97.14

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI1 40S ribosomal protein S13-2

2.0e-63

85.71

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI  V+SVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

8.4e-70

91.43

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A

2.2e-70

92.14

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCCACGGATGTGGAAGATAATAT
CTGCAAGTTTGCGAAGAAGGGTTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGCATAGCTCAAGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTA
TTCTTAAAGCCCATGGGCTGGCACCCGAGATTCCTGAGGATCTTTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGAT
TCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATAG

mRNA sequence

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Protein sequence

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MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWK

Carg02486 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome