; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02488 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02488
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor bHLH118-like
Genome locationCarg_Chr02:8476105..8476835
RNA-Seq ExpressionCarg02488
SyntenyCarg02488
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR014724 - RNA polymerase Rpb2, OB-fold
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036082.1 DNA-directed RNA polymerase subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-114100Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESE
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESE
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESE

Query:  RIINKIPHLQARLL
        RIINKIPHLQARLL
Subjt:  RIINKIPHLQARLL

XP_008437182.1 PREDICTED: transcription factor bHLH36-like [Cucumis melo]2.1e-5067.43Show/hide
Query:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL
        +N+ SPFS+DLG+EL PLPSLSCID   VPQFPSI   +NN S T   +PKNGRRKKPPAN+SDD  D  N NEHKKKKIMHRDVERQRRQ+M+SLY+TL
Subjt:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL

Query:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER
        RSLLP EYLKGKRSICDHM E VKYIR+MQS+IQ LC+KRDELK++   N    MVET ++ K    D V++  R
Subjt:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER

XP_022958459.1 transcription factor bHLH118-like [Cucurbita moschata]2.3e-8495.38Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSK    D VL+  R
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER

XP_022995893.1 transcription factor bHLH118-like [Cucurbita maxima]1.2e-8095.73Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLD+NKSG+QKPKNGRRK PPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQ L NKRDELKRVSDKNPVATMVETLDSSK  S
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS

XP_023522249.1 transcription factor bHLH118-like [Cucurbita pepo subsp. pepo]1.4e-8196.34Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDN+GSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRK PPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQ L NKRDELKRVSDKNPVATMVETLDSSK  S
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS

TrEMBL top hitse value%identityAlignment
A0A1S3ATY1 transcription factor bHLH36-like1.0e-5067.43Show/hide
Query:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL
        +N+ SPFS+DLG+EL PLPSLSCID   VPQFPSI   +NN S T   +PKNGRRKKPPAN+SDD  D  N NEHKKKKIMHRDVERQRRQ+M+SLY+TL
Subjt:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL

Query:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER
        RSLLP EYLKGKRSICDHM E VKYIR+MQS+IQ LC+KRDELK++   N    MVET ++ K    D V++  R
Subjt:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER

A0A5A7TLF7 Transcription factor bHLH36-like1.0e-5067.43Show/hide
Query:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL
        +N+ SPFS+DLG+EL PLPSLSCID   VPQFPSI   +NN S T   +PKNGRRKKPPAN+SDD  D  N NEHKKKKIMHRDVERQRRQ+M+SLY+TL
Subjt:  DNIGSPFSYDLGEELFPLPSLSCID-IPVPQFPSISPLDNNKSGT--QKPKNGRRKKPPANSSDDIGD-MNPNEHKKKKIMHRDVERQRRQDMASLYATL

Query:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER
        RSLLP EYLKGKRSICDHM E VKYIR+MQS+IQ LC+KRDELK++   N    MVET ++ K    D V++  R
Subjt:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER

A0A6J1E8G7 transcription factor bHLH118-like1.2e-4654.75Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSL-SCID-IPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATL
        M  NI SP S+DLG+ELFPLPS+ SCID I VPQFPSISPL+N+KS +++PK   R+ PP N+S+   D NPN+ K+KKIMHRDVERQRRQ+M+SLY++L
Subjt:  MNDNIGSPFSYDLGEELFPLPSL-SCID-IPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATL

Query:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSE----------DVVL---ISERLVYENIYTSFHV
        RSLLP EYLKGK SI DHM E VKYI++MQ RI+ L +KRDELK +S +N    MVETL+SS+ +S            VVL      RL   NI     V
Subjt:  RSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSE----------DVVL---ISERLVYENIYTSFHV

Query:  RKYEIQTHVTSHESERIINKI
           EI + +T   +ER ++ I
Subjt:  RKYEIQTHVTSHESERIINKI

A0A6J1H558 transcription factor bHLH118-like1.1e-8495.38Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSK    D VL+  R
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISER

A0A6J1K9B6 transcription factor bHLH118-like5.6e-8195.73Show/hide
Query:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
        MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLD+NKSG+QKPKNGRRK PPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS
Subjt:  MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRS

Query:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS
        LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQ L NKRDELKRVSDKNPVATMVETLDSSK  S
Subjt:  LLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNS

SwissProt top hitse value%identityAlignment
A4GGA5 DNA-directed RNA polymerase subunit beta5.5e-1781.13Show/hide
Query:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL
        YNSED VLISERLVYE+I+TSFH+RKYEIQTH+TS+ SERI NKIPHL+A LL
Subjt:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL

Q09X25 DNA-directed RNA polymerase subunit beta1.6e-1679.25Show/hide
Query:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL
        YNSED VLI+ERLVYE+IYTSFH+RKYEI THVTSH  ERI N+IPHL+A LL
Subjt:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL

Q4VZP1 DNA-directed RNA polymerase subunit beta3.2e-1781.13Show/hide
Query:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL
        YN ED VLISERL+YE+IYTSFH+RKYEIQTHVTSH  ERI N+IPHL+ARLL
Subjt:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL

Q8HVY5 DNA-directed RNA polymerase subunit beta4.2e-1781.13Show/hide
Query:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL
        YNSED VLI+ERLVYE+IYTSFH+RKYEIQTH+TS+ SERI NKIPHL+A LL
Subjt:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL

Q9BBS9 DNA-directed RNA polymerase subunit beta2.7e-1679.25Show/hide
Query:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL
        YNSED VLIS+RLVYE+IYTSFH+RKYEIQTHVTS+  ERI NKIPHL+  LL
Subjt:  YNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL

Arabidopsis top hitse value%identityAlignment
AT1G12540.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.1e-1552.05Show/hide
Query:  NEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKR
        +E K K+  H+++ERQRRQ+  SL+  LR LLP +Y+KGKRS  DH+LEAV YI+ +Q +I+ +  KRD +KR
Subjt:  NEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKR

AT1G62975.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-1542.31Show/hide
Query:  NPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRV-SDKNPVATMVETLDSSKYNSEDV
        N ++ + KK+ HRD+ERQRRQ+++SL+  LR+LLP +Y++GKRS  DH+++AV YI+ +Q +I+ L  KR+ +K+V S      + +E   SS  +S   
Subjt:  NPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRV-SDKNPVATMVETLDSSKYNSEDV

Query:  VLIS
         L S
Subjt:  VLIS

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.7e-1644.12Show/hide
Query:  PKNGRRKKPPANSSDDIGD-------MNPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDEL
        PK  +R++P +++ +  G           +  KKKK++HRD+ERQRRQ+MA+L+ATLR+ LP +Y+KGKR++ DH+  AV +I+  ++RI+ L  +RDEL
Subjt:  PKNGRRKKPPANSSDDIGD-------MNPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDEL

Query:  KR
         R
Subjt:  KR

AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.8e-1557.14Show/hide
Query:  KKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVS
        +K+MHR+ ERQRRQ+MASLYA+LRSLLP  ++KGKRS  D + EAV YI+++Q +I+ L  +RD+L  +S
Subjt:  KKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVS

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein6.3e-1657.14Show/hide
Query:  KKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKR
        K+KK++HR++ERQRRQ+MA L+A+LRS LP +Y+KGKR++ DH+  AV +I+  Q+RI+ L  +RDELKR
Subjt:  KKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGKRSICDHMLEAVKYIRHMQSRIQVLCNKRDELKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGACAACATTGGATCCCCATTTTCTTATGACTTGGGAGAAGAACTATTCCCTCTCCCTTCACTTTCCTGCATAGATATTCCTGTTCCTCAGTTTCCCTCCATCTC
TCCCTTGGACAACAATAAAAGTGGTACTCAAAAGCCCAAAAATGGCCGCCGGAAAAAACCACCGGCCAACAGTTCCGATGATATTGGCGATATGAACCCAAACGAACACA
AAAAGAAGAAGATTATGCACAGAGATGTGGAGCGCCAGAGGAGACAAGATATGGCTTCTCTTTACGCCACTCTTCGCTCACTTCTCCCTCATGAATATCTCAAGGGAAAA
CGGTCGATATGTGACCATATGCTGGAAGCAGTGAAGTACATTCGACATATGCAGAGCAGGATTCAAGTTTTGTGTAATAAAAGAGACGAGCTGAAAAGGGTGTCTGACAA
AAATCCAGTGGCTACCATGGTGGAGACCCTTGATTCCTCTAAATACAATTCTGAAGATGTCGTACTAATTAGCGAGCGTCTGGTATATGAAAATATTTATACTTCTTTTC
ACGTACGGAAATATGAAATTCAAACTCATGTGACAAGCCACGAATCTGAAAGAATCATTAACAAAATCCCACATCTGCAAGCCCGCTTACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGACAACATTGGATCCCCATTTTCTTATGACTTGGGAGAAGAACTATTCCCTCTCCCTTCACTTTCCTGCATAGATATTCCTGTTCCTCAGTTTCCCTCCATCTC
TCCCTTGGACAACAATAAAAGTGGTACTCAAAAGCCCAAAAATGGCCGCCGGAAAAAACCACCGGCCAACAGTTCCGATGATATTGGCGATATGAACCCAAACGAACACA
AAAAGAAGAAGATTATGCACAGAGATGTGGAGCGCCAGAGGAGACAAGATATGGCTTCTCTTTACGCCACTCTTCGCTCACTTCTCCCTCATGAATATCTCAAGGGAAAA
CGGTCGATATGTGACCATATGCTGGAAGCAGTGAAGTACATTCGACATATGCAGAGCAGGATTCAAGTTTTGTGTAATAAAAGAGACGAGCTGAAAAGGGTGTCTGACAA
AAATCCAGTGGCTACCATGGTGGAGACCCTTGATTCCTCTAAATACAATTCTGAAGATGTCGTACTAATTAGCGAGCGTCTGGTATATGAAAATATTTATACTTCTTTTC
ACGTACGGAAATATGAAATTCAAACTCATGTGACAAGCCACGAATCTGAAAGAATCATTAACAAAATCCCACATCTGCAAGCCCGCTTACTCTAA
Protein sequenceShow/hide protein sequence
MNDNIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSGTQKPKNGRRKKPPANSSDDIGDMNPNEHKKKKIMHRDVERQRRQDMASLYATLRSLLPHEYLKGK
RSICDHMLEAVKYIRHMQSRIQVLCNKRDELKRVSDKNPVATMVETLDSSKYNSEDVVLISERLVYENIYTSFHVRKYEIQTHVTSHESERIINKIPHLQARLL