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Carg02553 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02553
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDET1- and DDB1-associated protein 1
Genome locationCarg_Chr02:8134960..8137426
RNA-Seq ExpressionCarg02553
SyntenyCarg02553
Gene Ontology termsNA
InterPro domainsIPR018276 - DET1- and DDB1-associated protein 1, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036017.1 hypothetical protein SDJN02_02817 [Cucurbita argyrosperma subsp. argyrosperma]6.4e-110100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSGVNCEEIEPPRDLRCSVTVWALLIFGITDLFSGSIFKFLTILKRNHSNLWTRSKLPLPFEYTNEDDSSNLSS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPSGVNCEEIEPPRDLRCSVTVWALLIFGITDLFSGSIFKFLTILKRNHSNLWTRSKLPLPFEYTNEDDSSNLSS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPSGVNCEEIEPPRDLRCSVTVWALLIFGITDLFSGSIFKFLTILKRNHSNLWTRSKLPLPFEYTNEDDSSNLSS

Query:  YPQQDPSATGSGQEQRDLQSSIRCRSTEASNQEHLLPTLQIEPWRAVSSNNVKSVLCCEICVLYNESKLPAQWPPEKKQLGPTFKCCIYILLLVRMC
        YPQQDPSATGSGQEQRDLQSSIRCRSTEASNQEHLLPTLQIEPWRAVSSNNVKSVLCCEICVLYNESKLPAQWPPEKKQLGPTFKCCIYILLLVRMC
Subjt:  YPQQDPSATGSGQEQRDLQSSIRCRSTEASNQEHLLPTLQIEPWRAVSSNNVKSVLCCEICVLYNESKLPAQWPPEKKQLGPTFKCCIYILLLVRMC
XP_004143885.1 DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus]3.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
XP_022157124.1 DET1- and DDB1-associated protein 1 isoform X2 [Momordica charantia]3.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
XP_022928761.1 DET1- and DDB1-associated protein 1-like [Cucurbita moschata]3.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
XP_023532116.1 DET1- and DDB1-associated protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]3.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
TrEMBL top hitse value%identityAlignment
A0A0A0KKG6 DET1- and DDB1-associated protein 11.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
A0A6J1DSK3 DET1- and DDB1-associated protein 11.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
A0A6J1DVL7 DET1- and DDB1-associated protein 11.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
A0A6J1I2X6 DET1- and DDB1-associated protein 11.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
A0A6J1K4A1 DET1- and DDB1-associated protein 11.9e-06100Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
SwissProt top hitse value%identityAlignment
Q9FFS4 DET1- and DDB1-associated protein 15.3e-0682.14Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        M S+LGDLPS+DPHNFSQ RPSDPS PS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
Arabidopsis top hitse value%identityAlignment
AT5G41560.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).3.7e-0782.14Show/hide
Query:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS
        M S+LGDLPS+DPHNFSQ RPSDPS PS
Subjt:  MGSMLGDLPSYDPHNFSQLRPSDPSTPS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTATGCTCGGTGACTTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTGGTGTGAATTGTGAGGAAATTGAACC
TCCTCGTGATCTTCGTTGCTCTGTTACTGTTTGGGCTCTGCTAATTTTTGGCATTACTGATCTGTTTTCTGGGTCAATCTTCAAGTTTCTAACGATTCTGAAGCGCAACC
ATTCCAATCTTTGGACTAGGAGCAAGTTGCCTCTTCCTTTTGAGTATACAAACGAAGATGATTCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCGCCACTGGA
TCAGGTCAAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCGGAGCACGGAAGCAAGCAACCAAGAGCATCTACTGCCAACACTTCAAATTGAGCCTTGGAGGGCAGT
TTCTTCCAACAATGTAAAATCTGTTCTATGTTGTGAAATATGTGTTCTGTATAATGAGAGCAAATTGCCTGCTCAGTGGCCGCCGGAGAAGAAACAGCTCGGCCCGACAT
TTAAATGCTGTATATACATTTTACTCCTTGTAAGAATGTGCTAA
mRNA sequenceShow/hide mRNA sequence
TTCTCTTCCTCTTCCCTCTATTTCTAACGTAAATTCAGCGGCATTTTGATGGGGTCTATGCTCGGTGACTTGCCGTCATATGATCCTCACAACTTCAGCCAACTCCGACC
CTCCGATCCTTCAACTCCTTCTGGTGTGAATTGTGAGGAAATTGAACCTCCTCGTGATCTTCGTTGCTCTGTTACTGTTTGGGCTCTGCTAATTTTTGGCATTACTGATC
TGTTTTCTGGGTCAATCTTCAAGTTTCTAACGATTCTGAAGCGCAACCATTCCAATCTTTGGACTAGGAGCAAGTTGCCTCTTCCTTTTGAGTATACAAACGAAGATGAT
TCCAGCAACCTATCATCCTACCCACAGCAGGACCCTTCCGCCACTGGATCAGGTCAAGAACAAAGAGACCTGCAGTCGAGCATCCGATGCCGGAGCACGGAAGCAAGCAA
CCAAGAGCATCTACTGCCAACACTTCAAATTGAGCCTTGGAGGGCAGTTTCTTCCAACAATGTAAAATCTGTTCTATGTTGTGAAATATGTGTTCTGTATAATGAGAGCA
AATTGCCTGCTCAGTGGCCGCCGGAGAAGAAACAGCTCGGCCCGACATTTAAATGCTGTATATACATTTTACTCCTTGTAAGAATGTGCTAAACTCAGCCACACCAAACT
GTTCTCAAAAACATTAACTCAGTTGAAGAATTGTAACTAATATGAGTGTGCTTCCAAACAAGAACAGTTCACAGCTTAGCATTTTGGCCTTCAAATCTTGGCCCTATTCT
TCTTGAAATATGTTCTAGTTTGTTGCGTTGGTAGATATT
Protein sequenceShow/hide protein sequence
MGSMLGDLPSYDPHNFSQLRPSDPSTPSGVNCEEIEPPRDLRCSVTVWALLIFGITDLFSGSIFKFLTILKRNHSNLWTRSKLPLPFEYTNEDDSSNLSSYPQQDPSATG
SGQEQRDLQSSIRCRSTEASNQEHLLPTLQIEPWRAVSSNNVKSVLCCEICVLYNESKLPAQWPPEKKQLGPTFKCCIYILLLVRMC