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Carg02560 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02560
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLEA_2 domain-containing protein
Genome locationCarg_Chr02:8093184..8093459
RNA-Seq ExpressionCarg02560
SyntenyCarg02560
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606064.1 hypothetical protein SDJN03_03381, partial [Cucurbita argyrosperma subsp. sororia]7.5e-3797.62Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

KAG7036010.1 hypothetical protein SDJN02_02810, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-41100Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI
        MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI

XP_022958536.1 uncharacterized protein LOC111459739 [Cucurbita moschata]7.5e-3797.62Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

XP_022995815.1 uncharacterized protein LOC111491239 [Cucurbita maxima]8.3e-3695.24Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        M +KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSN TS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

XP_023532981.1 uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo]2.8e-3696.43Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA+KDQVKPLASPATHLRSDDD FLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

TrEMBL top hitse value%identityAlignment
A0A0A0KMH1 LEA_2 domain-containing protein6.4e-2678.82Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA K+QVKPLAS +  LRSDD  FLPPP  KL LHRNKYIMC GCFAALLLILAVIGIVLGFTV HIKTPD+KID LSF N T S
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPP-AKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

A0A1S3ATT7 uncharacterized protein LOC1034827941.9e-2576.19Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA K+QVKPLAS    LRSDD  FLPPP KL L+RNKYI C GCF+ALLLILAVIGIVLGFTV HIKTPD+KID LSF N T S
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

A0A5A7THA2 Late embryogenesis abundant protein-like protein1.9e-2576.19Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA K+QVKPLAS    LRSDD  FLPPP KL L+RNKYI C GCF+ALLLILAVIGIVLGFTV HIKTPD+KID LSF N T S
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

A0A6J1H2C0 uncharacterized protein LOC1114597393.6e-3797.62Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        MA+KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

A0A6J1K4Z4 uncharacterized protein LOC1114912394.0e-3695.24Show/hide
Query:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS
        M +KDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSN TS+
Subjt:  MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23610.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family3.0e-0738.75Show/hide
Query:  KDQVKPLASPATHLRSD----DDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFS
        +DQ KPLA      RSD    +DQ+     K    + K I+C G  A+L +++AV  IVL  TV H+ +P+L +D +SF+
Subjt:  KDQVKPLASPATHLRSD----DDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAA
ATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCG
ATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCAGAAAGACCAGGTCAAACCCTTGGCTTCACCCGCCACCCATCTCCGGAGCGACGACGATCAGTTTCTTCCCCCTCCGGCCAAGCTCCGCCTCCACAGGAACAA
ATACATCATGTGCTCCGGCTGCTTTGCCGCACTCCTCTTGATCCTCGCCGTTATCGGCATCGTCCTCGGCTTCACCGTCCTCCATATCAAAACCCCAGATCTCAAAATCG
ATAAGCTCTCGTTTTCAAATGCTACTTCAAGTAAGTTTAACATTAGAAGAATTTGA
Protein sequenceShow/hide protein sequence
MAQKDQVKPLASPATHLRSDDDQFLPPPAKLRLHRNKYIMCSGCFAALLLILAVIGIVLGFTVLHIKTPDLKIDKLSFSNATSSKFNIRRI