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Carg02561 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02561
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLate embryogenesis abundant protein-like protein
Genome locationCarg_Chr02:8092654..8093082
RNA-Seq ExpressionCarg02561
SyntenyCarg02561
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004864 - Late embryogenesis abundant protein, LEA_2 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036009.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-73100Show/hide
Query:  MENSNYLCFSDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPG
        MENSNYLCFSDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPG
Subjt:  MENSNYLCFSDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPG

Query:  RVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        RVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
Subjt:  RVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

XP_008437350.1 PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo]6.0e-4164.39Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+ G+I+VASV VRNPNVASFKYSKA+T IYYHN++IGEGET  GE KAKDT+ MNVTV+I+  ++D+  SL++D  SG L+ISSYTEIPGRVK++G IK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS
        K + VK+ CS TYN+K++TI+++DCDQ V++S
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS

XP_022958536.1 uncharacterized protein LOC111459739 [Cucurbita moschata]6.1e-6292.48Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+GGVIIV SVFVRNPNVASFKY KATTVIYYH++MIGEGET GGEAKAKDTMTMNVT+EIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFI+
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        K+FEVKMECSFTYNAKTQTIE+EDCDQHVKMSD
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

XP_022995815.1 uncharacterized protein LOC111491239 [Cucurbita maxima]1.7e-5990.23Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+GG+IIVASVFVRNPNVASFKYSKAT +IYYH  MIGEGET GGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSY EIPGRVKIIGFIK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        K FEVK+ECSFTYNAKTQTIEKEDCD+ VK+SD
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

XP_023532981.1 uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo]5.6e-6394.74Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+GG+IIVASVFVRNPN ASFKYSKATTVIYYH E+IGEGET GGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        KKF VKMECSFTYNAKTQTIEKEDCDQHVKMSD
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

TrEMBL top hitse value%identityAlignment
A0A0A0KMH1 LEA_2 domain-containing protein1.1e-4065.15Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+ G+I+VASV VRNPNVASFKYSKA+  IYYH+++IGEGET  GE KAKDT+ MNVTVEI+  +MD+  SL++D  SG L+ISSYTEIPGRVKI+G IK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS
        K + VK+ CS TYN+K++TI+ +DCDQ V++S
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS

A0A1S3ATT7 uncharacterized protein LOC1034827942.9e-4164.39Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+ G+I+VASV VRNPNVASFKYSKA+T IYYHN++IGEGET  GE KAKDT+ MNVTV+I+  ++D+  SL++D  SG L+ISSYTEIPGRVK++G IK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS
        K + VK+ CS TYN+K++TI+++DCDQ V++S
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS

A0A5A7THA2 Late embryogenesis abundant protein-like protein2.9e-4164.39Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+ G+I+VASV VRNPNVASFKYSKA+T IYYHN++IGEGET  GE KAKDT+ MNVTV+I+  ++D+  SL++D  SG L+ISSYTEIPGRVK++G IK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS
        K + VK+ CS TYN+K++TI+++DCDQ V++S
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMS

A0A6J1H2C0 uncharacterized protein LOC1114597393.0e-6292.48Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+GGVIIV SVFVRNPNVASFKY KATTVIYYH++MIGEGET GGEAKAKDTMTMNVT+EIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFI+
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        K+FEVKMECSFTYNAKTQTIE+EDCDQHVKMSD
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

A0A6J1K4Z4 uncharacterized protein LOC1114912398.1e-6090.23Show/hide
Query:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK
        S+GG+IIVASVFVRNPNVASFKYSKAT +IYYH  MIGEGET GGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSY EIPGRVKIIGFIK
Subjt:  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIK

Query:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD
        K FEVK+ECSFTYNAKTQTIEKEDCD+ VK+SD
Subjt:  KKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

SwissProt top hitse value%identityAlignment
Q6DST1 Late embryogenesis abundant protein At1g640651.3e-0628.46Show/hide
Query:  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFE
        +V+ + +RN N  +F++  +T  V+Y  + ++GE +  G   +A  T+ +  V VEI +  + +   L +DL+ G L + S  E+ GR+K++G  +K+++
Subjt:  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFE

Query:  VK-MECSFTYNAKTQTIEKEDCD
        V  M C+   N   + I+   C+
Subjt:  VK-MECSFTYNAKTQTIEKEDCD

Arabidopsis top hitse value%identityAlignment
AT1G64065.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family9.3e-0828.46Show/hide
Query:  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFE
        +V+ + +RN N  +F++  +T  V+Y  + ++GE +  G   +A  T+ +  V VEI +  + +   L +DL+ G L + S  E+ GR+K++G  +K+++
Subjt:  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFE

Query:  VK-MECSFTYNAKTQTIEKEDCD
        V  M C+   N   + I+   C+
Subjt:  VK-MECSFTYNAKTQTIEKEDCD

AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family7.3e-2141.09Show/hide
Query:  VIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEM--DEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKK
        + ++  V V+NPN ASFKYS  TT IYY   ++GE     G+A+   T  MNVTV+I  + +  D GL   E  +SG +N+ SYT + G+VKI+G +KK 
Subjt:  VIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEM--DEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKK

Query:  FEVKMECSFTYNAKTQTIEKEDCDQHVKM
          VKM C+   N   Q I+  DC + + +
Subjt:  FEVKMECSFTYNAKTQTIEKEDCDQHVKM

AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family4.5e-1020.17Show/hide
Query:  VRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFT
        ++NPN   F Y  ++ ++ Y  ++IGE         A+ T+ +N+T+ + A+ +     L+ D+ +G + ++++ ++ G+V ++   K K +    C  +
Subjt:  VRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFT

Query:  YNAKTQTIEKEDCDQHVKM
         +   + +  + C    K+
Subjt:  YNAKTQTIEKEDCDQHVKM

AT4G23610.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family1.6e-0733.02Show/hide
Query:  IVASVFVRNPNVASFKYSKATTVIYYHNEM--IGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGL-SLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKF
        +   + + NPN A F   K   V +YH E+  +GE         AK T+ MN+T EI   ++   L  LMEDL   G+++ S  E+ GRVK +   +K  
Subjt:  IVASVFVRNPNVASFKYSKATTVIYYHNEM--IGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGL-SLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKF

Query:  EVKMEC
         ++ +C
Subjt:  EVKMEC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATTCCAATTATTTATGTTTCTCAGATGGTGGCGTAATCATTGTGGCTAGTGTCTTTGTGCGGAATCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCACGAC
GGTGATTTACTACCATAACGAGATGATCGGAGAGGGGGAGACGTCGGGGGGAGAGGCGAAGGCAAAGGACACGATGACGATGAATGTGACGGTGGAGATCAAAGCGGAGG
AAATGGATGAGGGTTTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATCAGTAGCTACACGGAAATCCCAGGAAGGGTTAAAATAATTGGATTCATCAAGAAA
AAGTTTGAGGTTAAAATGGAGTGCTCATTCACTTACAATGCTAAAACCCAAACGATTGAAAAGGAAGATTGTGATCAACATGTAAAAATGTCCGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATTCCAATTATTTATGTTTCTCAGATGGTGGCGTAATCATTGTGGCTAGTGTCTTTGTGCGGAATCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCACGAC
GGTGATTTACTACCATAACGAGATGATCGGAGAGGGGGAGACGTCGGGGGGAGAGGCGAAGGCAAAGGACACGATGACGATGAATGTGACGGTGGAGATCAAAGCGGAGG
AAATGGATGAGGGTTTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATCAGTAGCTACACGGAAATCCCAGGAAGGGTTAAAATAATTGGATTCATCAAGAAA
AAGTTTGAGGTTAAAATGGAGTGCTCATTCACTTACAATGCTAAAACCCAAACGATTGAAAAGGAAGATTGTGATCAACATGTAAAAATGTCCGATTAA
Protein sequenceShow/hide protein sequence
MENSNYLCFSDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKK
KFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD