CuGenDBv2

Gene ID	Carg02590
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
Genome location	Carg_Chr02:7937531..7937926
RNA-Seq Expression	Carg02590
Synteny	Carg02590
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010039 - response to iron ion (biological process) GO:0034756 - regulation of iron ion transport (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6606032.1 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-28

100

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Query:  MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
Subjt:  MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

KAG7035980.1 hypothetical protein SDJN02_02780, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-28

100

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Query:  MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
Subjt:  MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

XP_004145819.1 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Cucumis sativus]

4.2e-13

43.28

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------
        MQ KKLK+EISVLESSINET         +KIIQ S S Q+LPTKIIQ                                                    
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------

Query:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF
              VRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF

XP_008465418.1 PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 [Cucumis melo]

1.9e-13

44.03

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------
        MQ KKLKAEISVLESSINET         +KIIQ S S Q+LPTKIIQ                                                    
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------

Query:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF
              VRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF

XP_016903385.1 PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2 [Cucumis melo]

1.9e-21

77.63

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        MQ KKLKAEISVLESSINET         +KIIQ S S Q+LPTKIIQVRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDF4 Uncharacterized protein

2.3e-12

42.11

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------
        MQ KKLK+EISVLESSINET         +KIIQ S S Q+LPTKIIQ                                                    
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------

Query:  ------VRDCDVDMNLPSLKLWLTGALLNHGFE
              VRDC+VDMNLP+LKLWLTGALLNHGF+
Subjt:  ------VRDCDVDMNLPSLKLWLTGALLNHGFE

A0A1S3CQB6 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1

9.2e-14

44.03

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------
        MQ KKLKAEISVLESSINET         +KIIQ S S Q+LPTKIIQ                                                    
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------

Query:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF
              VRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF

A0A1S4E5Y5 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2

9.2e-22

77.63

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        MQ KKLKAEISVLESSINET         +KIIQ S S Q+LPTKIIQVRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

A0A5A7T764 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1

9.2e-14

44.03

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Query:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------
        MQ KKLKAEISVLESSINET         +KIIQ S S Q+LPTKIIQ                                                    
Subjt:  MQGKKLKAEISVLESSINET---------RKIIQASRSYQYLPTKIIQ----------------------------------------------------

Query:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF
              VRDC+VDMNLP+LKLWLTGALLNHGFEF
Subjt:  ------VRDCDVDMNLPSLKLWLTGALLNHGFEF

A0A6J1CGE1 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR

8.6e-12

40.74

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Query:  MQGKKLKAEISVLESSINE----------TRKIIQASRSYQYLPTKIIQ---------------------------------------------------
        MQ KKLKAEISVLESSINE          + + IQ SRS Q+LP KIIQ                                                   
Subjt:  MQGKKLKAEISVLESSINE----------TRKIIQASRSYQYLPTKIIQ---------------------------------------------------

Query:  -------VRDCDVDMNLPSLKLWLTGALLNHGFEF
               VRDC+VDMNLP++KLWLTGALLNHGFEF
Subjt:  -------VRDCDVDMNLPSLKLWLTGALLNHGFEF

SwissProt top hits

e value

%identity

Alignment

Q0V7X4 Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR

8.3e-04

52.78

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Query:  YLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        YL T  +     +  +NLP+LKLW+TG+LLN GFEF
Subjt:  YLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

Arabidopsis top hits

e value

%identity

Alignment

AT2G28160.1 FER-like regulator of iron uptake

5.9e-05

52.78

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Query:  YLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF
        YL T  +     +  +NLP+LKLW+TG+LLN GFEF
Subjt:  YLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

Sequences

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CDS sequence

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ATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGAT
AATTCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA

mRNA sequence

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Protein sequence

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MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

Carg02590 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome