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Carg02625 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02625
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S acidic ribosomal protein family
Genome locationCarg_Chr02:7741617..7742686
RNA-Seq ExpressionCarg02625
SyntenyCarg02625
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4493.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

KAG6605995.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.1e-48100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_022957717.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]1.1e-48100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_022996218.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]5.5e-4595.61Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGREKLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_023532554.1 60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]7.6e-4797.37Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVD INSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAG A GGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.9e-4392.17Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA-EKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EVD DRI SLL+QVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA EKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA-EKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like8.5e-4493.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGREKLASVPSGGGAV +AAPAGG AGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1GZW9 60S acidic ribosomal protein P2B-like5.2e-49100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like8.5e-4493.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAA E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1KA82 60S acidic ribosomal protein P2B-like2.7e-4595.61Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGREKLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B4.1e-3573.68Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE D +++  LLT++K KDITE+IA+GRE+L+SVPSGGGA+ + APA   AGGGAAPA   KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESD+DMGFSLFD
Subjt:  KEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A1.1e-3273.68Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MK VAAYLLAVL GN SP  DD+  IL SVG EVD +++  LL+Q+ GKDITELIA+GREK ASVP GGG VAVAA A   A GGAAPAA  KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-11.6e-3170.43Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE
        MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG APAA  KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Q9LXM8 60S acidic ribosomal protein P2-44.7e-3168.42Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG    AAP   ++GGG A A AEKKE K EE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-25.2e-3069.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A AA  KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family3.7e-3169.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A AA  KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family3.7e-3169.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG A AA  KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family1.1e-3270.43Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE
        MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA+   G  GGG APAA  KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT3G44590.1 60S acidic ribosomal protein family3.3e-3268.42Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG    AAP   ++GGG A A AEKKE K EE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family3.3e-3268.42Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE
        MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG    AAP   ++GGG A A AEKKE K EE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGA
CAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCG
TCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTC
AGCCTCTTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGAT
GATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGG
ACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAG
AGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGTTTCAGCCTCTTTGATTAAGCAACTCTTTAGTTGACGTTATCAGTTAGTGCTTTAGTTTACTTTCGT
TCAATCTTCCGAGCTGTGTAGCTTGGTAGGTGTTTTTCACTTTCTTTAACTTCATTAGTACTCACAAATTTTGATAGATGAAAGTGCAATTTTCAGTTTGAACTTCTCAG
CGATTACTGTCATTTGACTTGCGTGATTTATGATTCCCGTCTCATTTCAATATGCATGATTAATTTAGAGTATGCTAATT
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGF
SLFD