; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02641 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02641
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionheterogeneous nuclear ribonucleoprotein Q-like
Genome locationCarg_Chr02:7653879..7654794
RNA-Seq ExpressionCarg02641
SyntenyCarg02641
Gene Ontology termsGO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605979.1 Heterogeneous nuclear ribonucleoprotein Q, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2697.22Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGG  GSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

KAG7035930.1 hypothetical protein SDJN02_02730, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-28100Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

XP_022957931.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita moschata]1.7e-28100Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

XP_022995061.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita maxima]3.6e-2697.22Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGG  GSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

XP_023533658.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo]1.7e-28100Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

TrEMBL top hitse value%identityAlignment
A0A0A0KI54 Uncharacterized protein3.4e-2282.28Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS-------GHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQM+TPPPHPRSGGG   GSGGGSGSK+GGSSSR GRH+HDS       GHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS-------GHGRRYRPY

A0A1S3BMC2 nucleolin1.9e-2078.31Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS-----------GHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQM+TPPPHPRSGGG G GSGGGSGSK+ GSSSR GRH+HDS           GHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDS-----------GHGRRYRPY

A0A6J1DHV9 heterogeneous nuclear ribonucleoprotein Q1.7e-2186.11Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQM+TPPPHPRSG       GGGSGSK+GGSSSR GRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

A0A6J1H0I9 heterogeneous nuclear ribonucleoprotein Q-like8.3e-29100Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

A0A6J1K6U6 heterogeneous nuclear ribonucleoprotein Q-like1.7e-2697.22Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
        MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGG  GSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY

SwissProt top hitse value%identityAlignment
Q9ASP6 Heterogeneous nuclear ribonucleoprotein Q6.6e-0752.05Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY
        M M+PMLLPDGR+GYVLQQPG  M   PP         +GS GGSG        R   H HD    GRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY

Arabidopsis top hitse value%identityAlignment
AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.0e-0851.32Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPP---HPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGR-RYRPY
        M+MMP++LPDGRIGYVLQQPG   M  PP    P   GGSGS            SSS G + + D+G GR RY PY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPP---HPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGR-RYRPY

AT4G00830.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.7e-0852.05Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY
        M M+PMLLPDGR+GYVLQQPG  M   PP         +GS GGSG        R   H HD    GRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY

AT4G00830.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.7e-0852.05Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY
        M M+PMLLPDGR+GYVLQQPG  M   PP         +GS GGSG        R   H HD    GRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY

AT4G00830.3 RNA-binding (RRM/RBD/RNP motifs) family protein4.7e-0852.05Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY
        M M+PMLLPDGR+GYVLQQPG  M   PP         +GS GGSG        R   H HD    GRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY

AT4G00830.4 RNA-binding (RRM/RBD/RNP motifs) family protein4.7e-0852.05Show/hide
Query:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY
        M M+PMLLPDGR+GYVLQQPG  M   PP         +GS GGSG        R   H HD    GRRYRPY
Subjt:  MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGH-GRRYRPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGATGCCAATGTTGCTACCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGGTCACAAATGATGACTCCACCACCACATCCAAGAAGCGGTGGCGGCAG
CGGCAGCGGCAGCGGTGGGGGAAGTGGCAGTAAAAGTGGCGGCAGTTCTAGTAGGGGGGGGAGACATACACATGACAGTGGCCATGGTCGCAGGTATCGGCCATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATGATGCCAATGTTGCTACCTGATGGACGGATTGGCTATGTCTTGCAACAACCAGGGTCACAAATGATGACTCCACCACCACATCCAAGAAGCGGTGGCGGCAG
CGGCAGCGGCAGCGGTGGGGGAAGTGGCAGTAAAAGTGGCGGCAGTTCTAGTAGGGGGGGGAGACATACACATGACAGTGGCCATGGTCGCAGGTATCGGCCATATTAAT
TCCAGCCGGTTGGACGTTCTGCCCGTGAACAAAACATGAGTGTCGGCCTGGAAGTGCCTCTCCCTCCGCCTAACAAGTGATCATAGATTATTCCTCAGTATTGATGATTA
AGAGTGGAGCTAGCTAATTAATGGGGTGGGTTTGTAATGTGTTAGTGTCTATCAATATTTACCTTTACCTTACCTTACCTAGGTTACAGTTCAAATTAATTTATGTGTTC
TCCCCTCGGTTTTGTTCCTTCCTTTATCTCCCTACTACTTTTTAGAGAGAACAGAAATACGTTTTAGCAATCATCTGTCATAAAATTGGTGATCTCGAATTTGAGAATGT
GTATGCCTTGCGTGTTAACCAACTCCACCATTGGTACGTAAAAGAGTTCATAACTGATGCAACCGTTTTGACCAGTCGGCTACTT
Protein sequenceShow/hide protein sequence
MAMMPMLLPDGRIGYVLQQPGSQMMTPPPHPRSGGGSGSGSGGGSGSKSGGSSSRGGRHTHDSGHGRRYRPY