CuGenDBv2

Gene ID	Carg02726
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AP2-like ethylene-responsive transcription factor PLT2
Genome location	Carg_Chr02:7183833..7184423
RNA-Seq Expression	Carg02726
Synteny	Carg02726
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605902.1 AP2-like ethylene-responsive transcription factor PLT2, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-47

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Query:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG
        MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSN LQ + +S G
Subjt:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG

KAG7035846.1 AP2-like ethylene-responsive transcription factor PLT1 [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-77

100

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Query:  MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEI
        MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEI
Subjt:  MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEI

Query:  HADYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL
        HADYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL
Subjt:  HADYLFPITPFNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL

XP_022944693.1 AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita moschata]

8.0e-25

52.74

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Query:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP
        MGS+NSNN LS PL PTNPS                    +   ++PFQ  +EWNLIS +GGGE PKVADFLGVSKAENE  L+GFN+IH     DYLFP
Subjt:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP

Query:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK
        IT              P N+DSTT      NSNSLQ L LSMGSGK
Subjt:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK

XP_022958273.1 LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT1 [Cucurbita moschata]

7.7e-52

92.73

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Query:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG
        MGS+NSNNCLS PL PTNPS SLPE+PFQAPNEWNLIS+EGGGEAPKVADFLGVSKAENETHLMGFNEIH DYLFPITPFNVDSTTTNSNSLQCLNLSMG
Subjt:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG

Query:  SGKGEPPPPP
        SGKGEP PPP
Subjt:  SGKGEPPPPP

XP_022985835.1 AP2-like ethylene-responsive transcription factor PLT2 [Cucurbita maxima]

8.0e-25

52.74

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Query:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP
        MGS+NSNN LS PL PTNPS                    +   ++PFQ  +EWNLIS +GGGE PKVADFLGVSKAENE  L+GFN+IH     DYLFP
Subjt:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP

Query:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK
        IT              P N+DSTT      NSNSLQ L LSMGSGK
Subjt:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E5A7 AP2-like ethylene-responsive transcription factor PLT2

1.8e-22

47.8

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Query:  MGSINSNNCLSCPLPPTNPSSSLP------------------------EVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH-----A
        MGS+NSNN LS PL PTNP  SLP                        ++PFQ  +EWNLIS++GGGE PK+ADFLGVSKAENET L+GFNEIH      
Subjt:  MGSINSNNCLSCPLPPTNPSSSLP------------------------EVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH-----A

Query:  DYLFPIT--------------------PFNVDSTTT-------NSNSLQCLNLSMGSGK
        DYLFPIT                      N+DS+++       NSN LQ L LSMGSGK
Subjt:  DYLFPIT--------------------PFNVDSTTT-------NSNSLQCLNLSMGSGK

A0A5D3BC19 AP2-like ethylene-responsive transcription factor PLT2

2.4e-22

47.5

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Query:  MGSINSNNCLSCPLPPTNPSSSLP------------------------EVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH-----A
        MGS+NSNN LS PL PTNP  SLP                        ++PFQ  +EWNLIS++GGGE PK+ADFLGVSKAENET L+GFNEIH      
Subjt:  MGSINSNNCLSCPLPPTNPSSSLP------------------------EVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH-----A

Query:  DYLFPIT---------------------PFNVDSTTT-------NSNSLQCLNLSMGSGK
        DYLFPIT                       N+DS+++       NSN LQ L LSMGSGK
Subjt:  DYLFPIT---------------------PFNVDSTTT-------NSNSLQCLNLSMGSGK

A0A6J1FYB3 AP2-like ethylene-responsive transcription factor PLT2

3.9e-25

52.74

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Query:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP
        MGS+NSNN LS PL PTNPS                    +   ++PFQ  +EWNLIS +GGGE PKVADFLGVSKAENE  L+GFN+IH     DYLFP
Subjt:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP

Query:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK
        IT              P N+DSTT      NSNSLQ L LSMGSGK
Subjt:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK

A0A6J1H2P2 LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor PLT1

3.7e-52

92.73

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Query:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG
        MGS+NSNNCLS PL PTNPS SLPE+PFQAPNEWNLIS+EGGGEAPKVADFLGVSKAENETHLMGFNEIH DYLFPITPFNVDSTTTNSNSLQCLNLSMG
Subjt:  MGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITPFNVDSTTTNSNSLQCLNLSMG

Query:  SGKGEPPPPP
        SGKGEP PPP
Subjt:  SGKGEPPPPP

A0A6J1JCD5 AP2-like ethylene-responsive transcription factor PLT2

3.9e-25

52.74

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Query:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP
        MGS+NSNN LS PL PTNPS                    +   ++PFQ  +EWNLIS +GGGE PKVADFLGVSKAENE  L+GFN+IH     DYLFP
Subjt:  MGSINSNNCLSCPLPPTNPS--------------------SSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIH----ADYLFP

Query:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK
        IT              P N+DSTT      NSNSLQ L LSMGSGK
Subjt:  IT--------------PFNVDSTTT-----NSNSLQCLNLSMGSGK

SwissProt top hits

e value

%identity

Alignment

Q5YGP7 AP2-like ethylene-responsive transcription factor PLT2

4.1e-08

36.88

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Query:  INSNNCLSCPLPPTNPSSSLP--------------------EVPFQAPNEWNLISSEG----GGEAPKVADFLGVSKA---ENETHLMGFNEIH----AD
        +NSNN L+ PL PT+  SSLP                    + PFQ    WN+I+  G    GGE PKVADFLGVSK+     + +L+ +N+IH    +D
Subjt:  INSNNCLSCPLPPTNPSSSLP--------------------EVPFQAPNEWNLISSEG----GGEAPKVADFLGVSKA---ENETHLMGFNEIH----AD

Query:  YLFPITPFNVDSTTTNSN------------SLQCLNLSMGS
        Y F          T  SN            +LQ L LSMGS
Subjt:  YLFPITPFNVDSTTTNSN------------SLQCLNLSMGS

Q5YGP8 AP2-like ethylene-responsive transcription factor PLT1

2.0e-10

40.43

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Query:  INSNNCLSCPLPPTNPSSSLP-------------EVPFQAPNEWNLISSEG-----GGEAPKVADFLGVSKA-ENET-HLMGFNE----IHADYLFPITP
        +NSNN L  PL P N  SSLP             + PFQ   EWN+I+  G     GGE PKVADFLGVSK  EN++ HL+ +N+     H + L P   
Subjt:  INSNNCLSCPLPPTNPSSSLP-------------EVPFQAPNEWNLISSEG-----GGEAPKVADFLGVSKA-ENET-HLMGFNE----IHADYLFPITP

Query:  FN------VDSTTTNSNS----------LQCLNLSMGSGKG
         N       DS T N++S          LQ L LSMG+  G
Subjt:  FN------VDSTTTNSNS----------LQCLNLSMGSGKG

Arabidopsis top hits

e value

%identity

Alignment

AT1G51190.1 Integrase-type DNA-binding superfamily protein

2.9e-09

36.88

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Query:  INSNNCLSCPLPPTNPSSSLP--------------------EVPFQAPNEWNLISSEG----GGEAPKVADFLGVSKA---ENETHLMGFNEIH----AD
        +NSNN L+ PL PT+  SSLP                    + PFQ    WN+I+  G    GGE PKVADFLGVSK+     + +L+ +N+IH    +D
Subjt:  INSNNCLSCPLPPTNPSSSLP--------------------EVPFQAPNEWNLISSEG----GGEAPKVADFLGVSKA---ENETHLMGFNEIH----AD

Query:  YLFPITPFNVDSTTTNSN------------SLQCLNLSMGS
        Y F          T  SN            +LQ L LSMGS
Subjt:  YLFPITPFNVDSTTTNSN------------SLQCLNLSMGS

AT3G20840.1 Integrase-type DNA-binding superfamily protein

1.4e-11

40.43

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Query:  INSNNCLSCPLPPTNPSSSLP-------------EVPFQAPNEWNLISSEG-----GGEAPKVADFLGVSKA-ENET-HLMGFNE----IHADYLFPITP
        +NSNN L  PL P N  SSLP             + PFQ   EWN+I+  G     GGE PKVADFLGVSK  EN++ HL+ +N+     H + L P   
Subjt:  INSNNCLSCPLPPTNPSSSLP-------------EVPFQAPNEWNLISSEG-----GGEAPKVADFLGVSKA-ENET-HLMGFNE----IHADYLFPITP

Query:  FN------VDSTTTNSNS----------LQCLNLSMGSGKG
         N       DS T N++S          LQ L LSMG+  G
Subjt:  FN------VDSTTTNSNS----------LQCLNLSMGSGKG

Sequences

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CDS sequence

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ATGGGGAGTCCCGCTAAATCTTTTGAGAGATATTCACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTC
AAACAATTGCCTTTCCTGTCCACTTCCACCCACTAACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTG
GTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGTAAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCA
TTTAATGTGGACTCCACCACTACCAATTCAAATAGTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA

mRNA sequence

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GTTAATCCACCAATTTGATTGTTGTTGGGGGCTTTCACGGGTGCGAAAACCAATTGGGCGGTCAACAGATTGAAGCATGGGGAGTCCCGCTAAATCTTTTGAGAGATATT
CACTAATCTTTCCTTTTACCCTCTTCTTCTTCCCTGTTTTACCTCTGTTCCTGAAGAAAATGGGGTCCATCAATTCAAACAATTGCCTTTCCTGTCCACTTCCACCCACT
AACCCTTCATCCTCCTTGCCGGAAGTCCCATTTCAAGCCCCCAATGAGTGGAATCTGATAAGTAGTGAAGGCGGTGGTGAAGCTCCAAAAGTTGCAGACTTTTTAGGCGT
AAGCAAGGCAGAAAATGAGACACATCTCATGGGATTTAATGAAATTCATGCAGATTACTTGTTCCCAATCACACCATTTAATGTGGACTCCACCACTACCAATTCAAATA
GTCTGCAATGTTTGAATCTTTCAATGGGGAGTGGGAAGGGCGAACCCCCCCCCCCCCCCCCCCCACCACTTTAA

Protein sequence

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MGSPAKSFERYSLIFPFTLFFFPVLPLFLKKMGSINSNNCLSCPLPPTNPSSSLPEVPFQAPNEWNLISSEGGGEAPKVADFLGVSKAENETHLMGFNEIHADYLFPITP
FNVDSTTTNSNSLQCLNLSMGSGKGEPPPPPPPPL

Carg02726 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome