; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02780 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02780
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA-binding protein 2-like
Genome locationCarg_Chr09:1682880..1684154
RNA-Seq ExpressionCarg02780
SyntenyCarg02780
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591477.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]3.1e-65100Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKKPDSPALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

KAG7024360.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-66100Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSNQR
        DKKPDSPALKIQFAHFPFRLPSNQR
Subjt:  DKKPDSPALKIQFAHFPFRLPSNQR

XP_022936248.1 nuclear speckle RNA-binding protein A-like [Cucurbita moschata]1.4e-6296.75Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFIEARYARAAMEALQGY+FD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKK DSPALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

XP_022939988.1 RNA-binding protein 2-like [Cucurbita moschata]5.2e-5788.71Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        M MA+ GHE+ANSLGLR  +  PIS++ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARY+RAAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSNQ
        DKKPDS ALKIQFAHFPFRLPSNQ
Subjt:  DKKPDSPALKIQFAHFPFRLPSNQ

XP_022977142.1 RNA-binding protein 1-like isoform X3 [Cucurbita maxima]1.3e-6397.56Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGY+DIRVVHKEPRRRGDKATVLCFVEF EARYA+AAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKKPDSPALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

TrEMBL top hitse value%identityAlignment
A0A5D3D938 RNA-binding protein 2-like isoform X11.3e-5686.29Show/hide
Query:  MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKF
        M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGYKF
Subjt:  MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKF

Query:  DDKKPDSPALKIQFAHFPFRLPSN
        DDKKPDSPALKIQFAHFPFRLPSN
Subjt:  DDKKPDSPALKIQFAHFPFRLPSN

A0A6J1FCR4 nuclear speckle RNA-binding protein A-like6.9e-6396.75Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFIEARYARAAMEALQGY+FD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKK DSPALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

A0A6J1FN25 RNA-binding protein 2-like2.5e-5788.71Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        M MA+ GHE+ANSLGLR  +  PIS++ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARY+RAAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSNQ
        DKKPDS ALKIQFAHFPFRLPSNQ
Subjt:  DKKPDSPALKIQFAHFPFRLPSNQ

A0A6J1IHM4 RNA-binding protein 1-like isoform X36.2e-6497.56Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGY+DIRVVHKEPRRRGDKATVLCFVEF EARYA+AAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKKPDSPALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

A0A6J1J4R2 RNA-binding protein 2-like1.3e-5688.62Show/hide
Query:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        M MA+ GHE+ANSLGLR  +  PIS+ ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARY+RAAMEALQGYKFD
Subjt:  MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD

Query:  DKKPDSPALKIQFAHFPFRLPSN
        DKKPDS ALKIQFAHFPFRLPSN
Subjt:  DKKPDSPALKIQFAHFPFRLPSN

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A5.7e-2240.34Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ + R     VLCFV+F     A  A+ ALQGY+ D+ + D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD

Query:  SPALKIQFAHFPFRLPSNQ
        S  L++QF+  P   P  +
Subjt:  SPALKIQFAHFPFRLPSNQ

F4HWF9 Nuclear speckle RNA-binding protein B8.8e-2339.17Show/hide
Query:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP
        ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +P
Subjt:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP

Query:  DSPALKIQFAHFPFRLPSNQ
        DS  L++QF   P   P  +
Subjt:  DSPALKIQFAHFPFRLPSNQ

G7ID19 RNA-binding protein 24.3e-2246.39Show/hide
Query:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR
        P+    S+ ++V+GLP+D T+REV H+FRPF+GY+++R+V KE + RG    +LCFV+F     A  A+ ALQGYK D+  P+S  L++QF+  P R
Subjt:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR

Q6JB11 Protein MATERNALLY EXPRESSED GENE 51.7e-1846.51Show/hide
Query:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPA
        P+    S+ ++++GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F     A  A+EALQG+  DD    +PA
Subjt:  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPA

Q8H0P8 RNA-binding protein 11.1e-2250.56Show/hide
Query:  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFP
        S  ++++GLP+DCTRREV H+FRPF+GY+++R+V KE + RGD   +LCFV+F     A  A+ ALQGYK D+  P+S  L++QF+ +P
Subjt:  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFP

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding6.2e-2439.17Show/hide
Query:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP
        ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +P
Subjt:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP

Query:  DSPALKIQFAHFPFRLPSNQ
        DS  L++QF   P   P  +
Subjt:  DSPALKIQFAHFPFRLPSNQ

AT1G21320.2 nucleotide binding;nucleic acid binding6.2e-2439.17Show/hide
Query:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP
        ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V ++ + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +P
Subjt:  EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKP

Query:  DSPALKIQFAHFPFRLPSNQ
        DS  L++QF   P   P  +
Subjt:  DSPALKIQFAHFPFRLPSNQ

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-2340.34Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ + R     VLCFV+F     A  A+ ALQGY+ D+ + D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD

Query:  SPALKIQFAHFPFRLPSNQ
        S  L++QF+  P   P  +
Subjt:  SPALKIQFAHFPFRLPSNQ

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-2340.34Show/hide
Query:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD
        IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+ + R     VLCFV+F     A  A+ ALQGY+ D+ + D
Subjt:  IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPD

Query:  SPALKIQFAHFPFRLPSNQ
        S  L++QF+  P   P  +
Subjt:  SPALKIQFAHFPFRLPSNQ

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.0e-0740.85Show/hide
Query:  NIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD
        N +FV GLP D   RE+ +LFR   G++  ++ +     RGD+  V+ F  F   R+A AAM  L G KFD
Subjt:  NIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACT
TCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTA
CGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAG
ATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACT
TCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTA
CGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAG
ATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA
Protein sequenceShow/hide protein sequence
MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALK
IQFAHFPFRLPSNQR