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Carg02781 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02781
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA-binding protein 2-like
Genome locationCarg_Chr09:1684304..1684606
RNA-Seq ExpressionCarg02781
SyntenyCarg02781
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591477.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]8.1e-34100Show/hide
Query:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR
        MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR
Subjt:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR

KAG7024361.1 hypothetical protein SDJN02_13175, partial [Cucurbita argyrosperma subsp. argyrosperma]8.1e-34100Show/hide
Query:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR
        MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR
Subjt:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR

XP_022936248.1 nuclear speckle RNA-binding protein A-like [Cucurbita moschata]1.6e-1071.7Show/hide
Query:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP
        MRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Subjt:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP

XP_038896812.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]1.4e-0985.71Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK
        A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK

XP_038896813.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]1.4e-0985.71Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK
        A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK

TrEMBL top hitse value%identityAlignment
A0A1S3BU06 RNA-binding protein 2-like isoform X11.5e-0977.27Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD
        A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD

A0A1S3BUL5 RNA-binding protein 2-like isoform X25.7e-0980Show/hide
Query:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD
        GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Subjt:  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD

A0A5D3D938 RNA-binding protein 2-like isoform X11.5e-0977.27Show/hide
Query:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD
        A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Subjt:  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD

A0A6J1FCR4 nuclear speckle RNA-binding protein A-like8.0e-1171.7Show/hide
Query:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP
        MRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Subjt:  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP

A0A6J1J4R2 RNA-binding protein 2-like7.4e-0987.18Show/hide
Query:  AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK
        AGSVARSGLS YSEAPPLTSYPNSTSID W IPPD  QK
Subjt:  AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAG
GTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAG
GTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGGT
AG
Protein sequenceShow/hide protein sequence
MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR