| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7024417.1 DNA-directed RNA polymerase D subunit 2b, partial [Cucurbita argyrosperma subsp. argyrosperma] | 2.9e-248 | 100 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLNYLCGFYSGVSSAK
MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLNYLCGFYSGVSSAK
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLNYLCGFYSGVSSAK
Query: EIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRS
EIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRS
Subjt: EIVDLVDYGKDDPIVNLICHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRS
Query: EPIRSYKAEVDNKESSEKRRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLSFGLLVLGVSREFPLHHP
EPIRSYKAEVDNKESSEKRRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLSFGLLVLGVSREFPLHHP
Subjt: EPIRSYKAEVDNKESSEKRRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLSFGLLVLGVSREFPLHHP
Query: GIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDD
GIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDD
Subjt: GIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDD
Query: VVRVNVPYGAKLLCQELFSMVIEFETQLC
VVRVNVPYGAKLLCQELFSMVIEFETQLC
Subjt: VVRVNVPYGAKLLCQELFSMVIEFETQLC
|
|
| XP_008452849.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo] | 2.1e-129 | 36.41 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKDEQKRD EFD GGYFLI+GAEKIFI QEQICLRRLW+SN+QGWTVAYRSEVKRN+LIIRLVENSK E+LKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
F GVSS KEIVDL+DYG+DDP ++N++ CH
Subjt: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS G+L S+E FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| XP_022940261.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita moschata] | 3.0e-128 | 36.21 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKD+QKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SN QGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
F GVSS +EIVDL+D+G++DP V
Subjt: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------NLICH---------------------------------------------------------------------------
NL+ H
Subjt: --------------------NLICH---------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS F ++ VLG FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| XP_023524029.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo] | 3.0e-128 | 36.21 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKD+QKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SN QGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
F GVSS +EIVDL+D+G++DP V
Subjt: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------NLICH---------------------------------------------------------------------------
NL+ H
Subjt: --------------------NLICH---------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS F ++ VLG FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| XP_038897771.1 DNA-directed RNA polymerases IV and V subunit 2-like [Benincasa hispida] | 9.3e-130 | 36.61 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMK+EQKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SNIQGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDP-----------------------------------------------------------------------------
F GVSS KEIVDL+DYG+DDP
Subjt: GFYSGVSSAKEIVDLVDYGKDDP-----------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -----------------------------------------------------------------------------IVNLI------------------
I+ LI
Subjt: -----------------------------------------------------------------------------IVNLI------------------
Query: -------------------------------------------------------CHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
+FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: -------------------------------------------------------CHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE IRSYKAEVDNKESSEKRR SDD INFGK SK+ LD++GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS G+L S+E FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIASGG LK ATPFSTPSVDAIT++LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BUT1 DNA-directed RNA polymerase subunit beta | 1.0e-129 | 36.41 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKDEQKRD EFD GGYFLI+GAEKIFI QEQICLRRLW+SN+QGWTVAYRSEVKRN+LIIRLVENSK E+LKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
F GVSS KEIVDL+DYG+DDP ++N++ CH
Subjt: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS G+L S+E FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
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| A0A5D3D8Y5 DNA-directed RNA polymerase subunit beta | 1.0e-129 | 36.41 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKDEQKRD EFD GGYFLI+GAEKIFI QEQICLRRLW+SN+QGWTVAYRSEVKRN+LIIRLVENSK E+LKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
F GVSS KEIVDL+DYG+DDP ++N++ CH
Subjt: GFYSGVSSAKEIVDLVDYGKDDP-IVNLI-----------------------------------------------------------CH----------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS G+L S+E FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| A0A6J1C950 DNA-directed RNA polymerase subunit beta | 3.2e-128 | 36.11 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMK+EQKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SNIQGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
F GVSS KE+VDL+DYG+DDP V
Subjt: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------------------------------------------------------------------------NLI-------------------
NL+
Subjt: ------------------------------------------------------------------------------NLI-------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------------------------------------------------CHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
+FRVDTL+HQLHYPQ+PLFRTM ADCLGTPGYLSSH+GI P+PE
Subjt: -------------------------------------------------------CHFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE IRSYKA+VDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS G+L S+E FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLSF-------------------------------GLLVLGVSRE-FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIA+GG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN ASVIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQLC
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
|
|
| A0A6J1FHZ2 DNA-directed RNA polymerase subunit beta | 1.5e-128 | 36.21 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKD+QKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SN QGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
F GVSS +EIVDL+D+G++DP V
Subjt: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------NLICH---------------------------------------------------------------------------
NL+ H
Subjt: --------------------NLICH---------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS F ++ VLG FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| A0A6J1IXN3 DNA-directed RNA polymerase subunit beta | 1.5e-128 | 36.21 | Show/hide |
Query: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
MVNSDLCWMKD+QKRD EFDHGGYFLI+GAEKIFI QEQICLRRLW+SN QGWTVAYRSEVKRN+LIIRLVENSK EELKSKEKVLN ++
Subjt: MVNSDLCWMKDEQKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN----------YLC
Query: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
F GVSS +EIVDL+D+G++DP V
Subjt: GFYSGVSSAKEIVDLVDYGKDDPIV---------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------NLICH---------------------------------------------------------------------------
NL+ H
Subjt: --------------------NLICH---------------------------------------------------------------------------
Query: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
FRVDTL+HQLHYPQ+PLFRTMTADCLGTPGYLSSHTGILPKPE
Subjt: ---------------------------------------------------------FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPE
Query: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
FYNGQNAIVAVNVHLG NQEDSLVMNRASLERGMFRSE RSYKAEVDNKESSEKRR SDD INFGK SK+ LDD+GFPYIGANLQSG+IVIG C
Subjt: FYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRRNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGC
Query: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
AESGADHSIKLKHT KGMVQKV+LS F ++ VLG FP GIVPDIVIN FPSRQT GQLLEAA
Subjt: AESGADHSIKLKHTVKGMVQKVMLS-------FGLL----------------------VLGV---SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAA
Query: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
LGKGIASGG LK ATPFSTPSVDAITD+LH
Subjt: LGKGIASGGCLKSATPFSTPSVDAITDRLH----------------------------------------------------------------------
Query: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
+LSDSSQMHV QKCKN A+VIQ+SVA G KIRGPYCRVCES+DD+VRVNVPYGAKLLCQELFSM I +FETQ+C
Subjt: ----------------------SLSDSSQMHVSQKCKNAASVIQQSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSMVI--EFETQLC
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| SwissProt top hits | e value | %identity | Alignment |
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| P38420 DNA-directed RNA polymerase II subunit 2 | 1.3e-25 | 32.63 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
FR+DTL + L+YPQKPL T + L H LP G NAIVA++ + G NQEDS++MN++S++RG FRS RSY+ E + K
Subjt: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
Query: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
R + + S KLDD+G G + +++IG + DHSI L+H+ GMV +V+L+ GL + V
Subjt: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
Query: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
+ P G+ PDI++N PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Subjt: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
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| Q42877 DNA-directed RNA polymerase II subunit RPB2 | 5.0e-25 | 32.63 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
FR+DTL + L+YPQKPL T + L H LP G NAIVA++ + G NQEDS++MN++S++RG FRS RSY+ E + K
Subjt: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
Query: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
R + + S KLDD+G G + +++IG + DHS L+H+ GMV +V+L+ GL + V
Subjt: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
Query: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
+ P GI PDI++N PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Subjt: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
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| Q54J75 DNA-directed RNA polymerase II subunit rpb2 | 4.6e-23 | 30.56 | Show/hide |
Query: RVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK----ESSE
R+DT+ H L YPQKPL T + + L H LP GQN VA+ + G NQEDS+++N+++++RG+FRS R+YK E + E
Subjt: RVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNK----ESSE
Query: KRRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIGGCA---------------ESGADHSIKLKHTVKGMVQKVMLSF-------------GLLVL
++ D S K+DD+G G + +I+IG + D S L+ + G+V +V+L+ + V
Subjt: KRRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIGGCA---------------ESGADHSIKLKHTVKGMVQKVMLSF-------------GLLVL
Query: GVSREFPLHH-------------------PGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSL
+ +F H GIVPDI++N PSR T GQL+E LGK AS G ATPF+ +V+AI+ LH +
Subjt: GVSREFPLHH-------------------PGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLHSL
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| Q9LK40 DNA-directed RNA polymerases IV and V subunit 2 | 9.8e-82 | 44.69 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T+ ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
+ D+++ FGK +SK+ L+D+GFP+IGAN+ +G+IVIG C ESGADHSIKLKHT +G+VQKV+LS F +
Subjt: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
Query: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
VLG E FP GIVPDIVIN FPSRQT GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| Q9LK40 DNA-directed RNA polymerases IV and V subunit 2 | 5.5e-24 | 48.82 | Show/hide |
Query: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
MV S LC ++ +K D FD GGYF+I+GAEK+FI QEQ+C +RLW+SN WTV++RSE KRN+ I+RL EN K E+ K +EKVL
Subjt: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
Query: --YLCGFYSGVSSAKEIVDLVDYGKDD
+L F GVSS KE +DL+ + DD
Subjt: --YLCGFYSGVSSAKEIVDLVDYGKDD
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| Q9LV32 DNA-directed RNA polymerase D subunit 2b | 7.5e-82 | 44.59 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T+ ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDDVINFGKN-SKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
+ D+++ FGK SK+ L+D+GFP+IGAN+ +G+IVIG C ESGADHSIKLKHT +G+VQKV+LS F +
Subjt: RNSDDVINFGKN-SKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
Query: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
VLG E FP GIVPDIVIN FPSRQT GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
Query: ------------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQ
+LSDSSQMH+ +KCK A+VI+
Subjt: ------------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQ
Query: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
++ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| Q9LV32 DNA-directed RNA polymerase D subunit 2b | 2.1e-23 | 48.03 | Show/hide |
Query: MVNSDLCWMKDEQKRDSE-----FDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
MV S LC ++ K + + FD GGYF+I+GAEK+FI QEQ+C +RLW+SN WTV++RSE KRN+ I+RL EN K E+ K EKVL
Subjt: MVNSDLCWMKDEQKRDSE-----FDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
Query: --YLCGFYSGVSSAKEIVDLVDYGKDD
+L F GVSS KE +DL+ + DD
Subjt: --YLCGFYSGVSSAKEIVDLVDYGKDD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G29940.1 nuclear RNA polymerase A2 | 9.3e-11 | 23.68 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRR
FR D + L PQ P+ RT T E G NAIVAV H G + ED++++N++S+ERGM + ++ ++ ++ S
Subjt: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKRR
Query: NSDDVINFGKNSKVKLDDNGFPYIGANL-------------------------------------------QSGNIVIGGCAESGADHSIKLKHTVKGMV
+ + K ++D +G P +G L Q NI +H KG+
Subjt: NSDDVINFGKNSKVKLDDNGFPYIGANL-------------------------------------------QSGNIVIGGCAESGADHSIKLKHTVKGMV
Query: QKVMLSFGLLVLGVSREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPF
++ + GV+ G+ PD++IN FPSR T LLE+ KG + G ATPF
Subjt: QKVMLSFGLLVLGVSREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPF
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| AT3G18090.1 nuclear RNA polymerase D2B | 5.3e-83 | 44.59 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T+ ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDDVINFGKN-SKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
+ D+++ FGK SK+ L+D+GFP+IGAN+ +G+IVIG C ESGADHSIKLKHT +G+VQKV+LS F +
Subjt: RNSDDVINFGKN-SKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
Query: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
VLG E FP GIVPDIVIN FPSRQT GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS------------GGCLKSATPFSTPSVDAITDRLH--------------
Query: ------------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQ
+LSDSSQMH+ +KCK A+VI+
Subjt: ------------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQ
Query: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
++ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: QSVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT3G18090.1 nuclear RNA polymerase D2B | 1.5e-24 | 48.03 | Show/hide |
Query: MVNSDLCWMKDEQKRDSE-----FDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
MV S LC ++ K + + FD GGYF+I+GAEK+FI QEQ+C +RLW+SN WTV++RSE KRN+ I+RL EN K E+ K EKVL
Subjt: MVNSDLCWMKDEQKRDSE-----FDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
Query: --YLCGFYSGVSSAKEIVDLVDYGKDD
+L F GVSS KE +DL+ + DD
Subjt: --YLCGFYSGVSSAKEIVDLVDYGKDD
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| AT3G23780.1 nuclear RNA polymerase D2A | 7.0e-83 | 44.69 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T+ ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
+ D+++ FGK +SK+ L+D+GFP+IGAN+ +G+IVIG C ESGADHSIKLKHT +G+VQKV+LS F +
Subjt: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
Query: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
VLG E FP GIVPDIVIN FPSRQT GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT3G23780.1 nuclear RNA polymerase D2A | 3.9e-25 | 48.82 | Show/hide |
Query: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
MV S LC ++ +K D FD GGYF+I+GAEK+FI QEQ+C +RLW+SN WTV++RSE KRN+ I+RL EN K E+ K +EKVL
Subjt: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
Query: --YLCGFYSGVSSAKEIVDLVDYGKDD
+L F GVSS KE +DL+ + DD
Subjt: --YLCGFYSGVSSAKEIVDLVDYGKDD
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| AT3G23780.2 nuclear RNA polymerase D2A | 7.0e-83 | 44.69 | Show/hide |
Query: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
+ R DTL+ QL YPQKPLF+T+ ++C L K +NGQNAIVAVNVHLG NQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ SEKR
Subjt: HFRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEKR
Query: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
+ D+++ FGK +SK+ L+D+GFP+IGAN+ +G+IVIG C ESGADHSIKLKHT +G+VQKV+LS F +
Subjt: RNSDDVINFGK-NSKV----KLDDNGFPYIGANLQSGNIVIGGCAESGADHSIKLKHTVKGMVQKVMLS------------------------FGLL---
Query: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
VLG E FP GIVPDIVIN FPSRQT GQLLEAAL KGIA + ATPFSTP V IT++LH
Subjt: --VLGVSRE---FPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIAS-----------GGCLKSATPFSTPSVDAITDRLH---------------
Query: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
+LSDSSQMH+ +KCK A+VI++
Subjt: -----------------------------------------------------------------------------SLSDSSQMHVSQKCKNAASVIQQ
Query: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
+ +SG KIRGPYCRVC S D VVRV VPYGAKLLCQELFSM + F+T+LC
Subjt: SVASGHKIRGPYCRVCESIDDVVRVNVPYGAKLLCQELFSM--VIEFETQLC
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| AT3G23780.2 nuclear RNA polymerase D2A | 3.9e-25 | 48.82 | Show/hide |
Query: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
MV S LC ++ +K D FD GGYF+I+GAEK+FI QEQ+C +RLW+SN WTV++RSE KRN+ I+RL EN K E+ K +EKVL
Subjt: MVNSDLCWMKDE-----QKRDSEFDHGGYFLIEGAEKIFIVQEQICLRRLWVSNIQGWTVAYRSEVKRNKLIIRLVENSKPEELKSKEKVLN--------
Query: --YLCGFYSGVSSAKEIVDLVDYGKDD
+L F GVSS KE +DL+ + DD
Subjt: --YLCGFYSGVSSAKEIVDLVDYGKDD
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| AT4G21710.1 DNA-directed RNA polymerase family protein | 9.3e-27 | 32.63 | Show/hide |
Query: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
FR+DTL + L+YPQKPL T + L H LP G NAIVA++ + G NQEDS++MN++S++RG FRS RSY+ E + K
Subjt: FRVDTLTHQLHYPQKPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGCNQEDSLVMNRASLERGMFRSEPIRSYKAEVDNKESSEK--
Query: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
R + + S KLDD+G G + +++IG + DHSI L+H+ GMV +V+L+ GL + V
Subjt: --RRNSDDVINFGKNSKVKLDDNGFPYIGANLQSGNIVIG-------------GCAESGADHSIKLKHTVKGMVQKVMLSF---GLLVLGV---------
Query: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
+ P G+ PDI++N PSR T GQL+E +GK A G ATPF+ +VD I+ LH
Subjt: --------------------SREFPLHHPGIVPDIVINSCFFPSRQTSGQLLEAALGKGIASGGCLKSATPFSTPSVDAITDRLH
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