CuGenDBv2

Gene ID	Carg02839
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Carg_Chr09:1958571..1960181
RNA-Seq Expression	Carg02839
Synteny	Carg02839
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608304.1 DNA-directed RNA polymerases IV and V subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

7.5e-35

52.6

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

KAG7037651.1 DNA-directed RNA polymerases IV and V subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-35

52.6

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

XP_022940261.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita moschata]

7.5e-35

52.6

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

XP_022981836.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita maxima]

1.7e-34

52.08

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YN+LPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

XP_023524029.1 DNA-directed RNA polymerases IV and V subunit 2-like [Cucurbita pepo subsp. pepo]

7.5e-35

52.6

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L319 DNA-directed RNA polymerase subunit beta

9.2e-31

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDD--SERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI------------
        MG SGAKDD+E NSE EDLSP   +DTDDDDD  SE VNI   G         K S   F    LI+HQINSYNDFIK+G+QKAFD              
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDD--SERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI------------

Query:  --------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLIN--QDNRDVFKG
                                         YNMLPRHARLQNMT SSRMK NIS+E+YTQ+LV+SD  KTGKDQYVD++ +    DNRDVF G
Subjt:  --------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLIN--QDNRDVFKG

A0A5D3D8Y5 DNA-directed RNA polymerase subunit beta

3.5e-30

49.49

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDD--SERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI------------
        MG SG KDD+E NSE EDLSP   +DTDDDDD  SE VNI   G         K S   F    LI+HQINSYNDFIK+G+QKAFD              
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDD--SERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI------------

Query:  --------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLIN--QDNRDVFKG
                                         YNMLPRHARLQNMT SSRMK NIS+E+YTQ+LV+SD  KTGKDQYVD++ +    DNRDVF G
Subjt:  --------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLIN--QDNRDVFKG

A0A6J1C950 DNA-directed RNA polymerase subunit beta

2.6e-33

52.63

Show/hide

Query:  ASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI----------------
        +SGAKDD+E NSEAE  SP T MDTDDDD SE VNI+  G         K S   F    LI+HQINSYNDFI+SGLQKAFD                  
Subjt:  ASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI----------------

Query:  ----------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                     YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTGKDQYVD+DL++QDNR++F G
Subjt:  ----------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

A0A6J1FHZ2 DNA-directed RNA polymerase subunit beta

3.6e-35

52.6

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YNMLPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

A0A6J1IXN3 DNA-directed RNA polymerase subunit beta

8.1e-35

52.08

Show/hide

Query:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------
        MG SGAKDD+E NSE EDLSP T MDTDDDD SE VNI   G         K S   F    LI+HQ+NSYNDFIKSG+QK+FD                
Subjt:  MGASGAKDDMEWNSEAEDLSPETGMDTDDDDDSERVNIQIWG---------KHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCI--------------

Query:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
                                       YN+LPRHARLQNMT SSRMK NI+VEVYTQRLV SD  KTG+DQYVD+DL++QDNRD+F G
Subjt:  ------------------------------SYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

SwissProt top hits

e value

%identity

Alignment

Q9LK40 DNA-directed RNA polymerases IV and V subunit 2

2.5e-09

32.61

Show/hide

Query:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI
        K +   F    LI+HQ+NSYN FI+ GLQ  F                                         D      LP HARLQNMT S+R+K N+
Subjt:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI

Query:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
         VEV+   +V SD  KTG+D YV++ +++   +D+  G
Subjt:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

Arabidopsis top hits

e value

%identity

Alignment

AT3G18090.1 nuclear RNA polymerase D2B

1.5e-04

41.51

Show/hide

Query:  RLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
        RLQNMT S+R+K N  VEV+ + ++  D  KTG+D+YV++++++   +D+  G
Subjt:  RLQNMTCSSRMKKNISVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

AT3G23780.1 nuclear RNA polymerase D2A

1.8e-10

32.61

Show/hide

Query:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI
        K +   F    LI+HQ+NSYN FI+ GLQ  F                                         D      LP HARLQNMT S+R+K N+
Subjt:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI

Query:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
         VEV+   +V SD  KTG+D YV++ +++   +D+  G
Subjt:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

AT3G23780.2 nuclear RNA polymerase D2A

1.8e-10

32.61

Show/hide

Query:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI
        K +   F    LI+HQ+NSYN FI+ GLQ  F                                         D      LP HARLQNMT S+R+K N+
Subjt:  KHSDDIFQSDSLINHQINSYNDFIKSGLQKAF-----------------------------------------DCISYNMLPRHARLQNMTCSSRMKKNI

Query:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG
         VEV+   +V SD  KTG+D YV++ +++   +D+  G
Subjt:  SVEVYTQRLVTSD--KTGKDQYVDEDLINQDNRDVFKG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATTATTCAAGTTCTCTACTCCATCCGTCTTTTACGCTTTTGTCTCGTCGACAACGCTGATTCACTCCATTTCCTTGCGATTCATTGCTTCTGCAGTAGAGAAAGA
TCGTCTCCTCTCTGAAACTGGCGTCTGGCTCGAGCAAGAGCCGACGGCATTGTGTGGATGCTATATTCCGATATTTCTTCCAACGGATTTAGCAGGAGGAGGAGTCCGCA
GGAGCTGGCCTAGGAAACTAATGGGAGCATCAGGCGCAAAGGACGATATGGAGTGGAATAGTGAAGCGGAAGACTTATCACCTGAAACAGGTATGGATACAGATGATGAT
GATGATTCTGAGCGAGTCAACATACAGATCTGGGGGAAACACAGCGATGATATTTTTCAATCAGACAGCCTTATCAATCACCAAATCAACTCGTACAATGACTTCATAAA
AAGTGGTCTTCAGAAGGCCTTTGATTGTATTTCATATAACATGCTTCCTAGGCATGCTCGACTTCAGAATATGACTTGTTCATCAAGGATGAAAAAGAATATCAGTGTAG
AGGTATATACTCAAAGGTTAGTTACAAGCGACAAAACTGGAAAAGATCAATATGTCGACGAGGATCTTATAAATCAAGATAACAGGGATGTCTTTAAAGGCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSLFKFSTPSVFYAFVSSTTLIHSISLRFIASAVEKDRLLSETGVWLEQEPTALCGCYIPIFLPTDLAGGGVRRSWPRKLMGASGAKDDMEWNSEAEDLSPETGMDTDDD
DDSERVNIQIWGKHSDDIFQSDSLINHQINSYNDFIKSGLQKAFDCISYNMLPRHARLQNMTCSSRMKKNISVEVYTQRLVTSDKTGKDQYVDEDLINQDNRDVFKG

Carg02839 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome