CuGenDBv2

Gene ID	Carg02856
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L39
Genome location	Carg_Chr09:2058698..2060043
RNA-Seq Expression	Carg02856
Synteny	Carg02856
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CBI21094.3 unnamed protein product, partial [Vitis vinifera]

2.2e-22

79.17

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Query:  IGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +GF     S+  LAAD   +KMPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  IGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-22

77.33

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Query:  SLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SL +GF ++           R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-40

100

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Query:  SITLLSRAYKASSLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SITLLSRAYKASSLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SITLLSRAYKASSLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-22

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Query:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

1.0e-22

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Query:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

7.5e-24

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Query:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein

9.1e-22

83.58

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Query:  IPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PPS ++     R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A368RK84 Uncharacterized protein

1.8e-22

78.87

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Query:  GFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        GF    P       DCR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  GFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

4.8e-23

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Query:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

K3YM29 Uncharacterized protein

3.1e-22

83.08

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Query:  PSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P       DCR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

1.5e-21

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

3.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

3.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

8.8e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

3.0e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

9.3e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

3.4e-21

90.2

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

1.1e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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mRNA sequence

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TCGATTACCCTTCTCAGTAGAGCGTATAAAGCTTCTTCGCTGCTAATAGGGTTTTTTATAATCCCGCCATCTGCTTCCAAGCTCGCCGCCGATTGCCGGAACTCGAAAAT
GCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGCCTGAGAACCGACAATACGATCAGATACA
ATGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTAATCTTCAATGTTCATTTACCTTGACTTTGTTAAGATTGAGAACTTGAATTT
TCGTACTATTTTTGTAGTTGAGCAACTGAAATCTAGTTCATCTGATATTTTTGTTTAATCATCACTACACTCAAGTTTGAAGTGCTTTCGAATGGAGTGAATTTACTGTC
GATGGTTGTCTGTGGTATAAACGTTAATGGCATTTGCTTGCTCCTGTTCTCCAAGGATTTAAACGAGATCGATAGGCATTCTTTGAATCTGATCGAAGTCTAGAGATTCT
TGAAAACTTTTTAAATCAACAAATAACCATTTTCCACTTCCTAGCAACGTTATAAATTTTAGGATTTAGCTTCGTCCTTGTTTTATCGATAAATCTGAGTAGTTTGGGTT
GAGCCAATTCATAAAACTCTGAGGCCAAAATATACTCAGAATTCATAACTGACCTTCGTTTACAGTGAAAGATAACATAGAAAATCCAACTATCTTATCCGTGTTGAGAC
TTTGTCAATGGTTCCAAAGAGAAAATTCTTTGAGATTCCGTTCTGTAGGATACTTGTTAATATCATTTCGACCTTGAACAAGAACCAATCTATATTTTCTAAGGCTCTAC
CTCTGTGTCATTGAATTCTGAAGCACTTACAACTTTAGTTGATCTAAACAGAGTAGTCTTCGTCTAGGAAGTCGGTAGAGGTAGACCAGTCGATGGTTCCGAAGAGAACT
TTATAGTTGATCATTTCGACTTTGTCGATGGTTCCGAAGAGAATTCCTTGAGATTCCCTTCTGTAGAATACTTGTTAATATCATTTCGACCTTGAACAAGAACCGATCTT
TATGCTCTTTAAGTTTCTACAGCTGTGTCATTGAATTCCATAGC

Protein sequence

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SITLLSRAYKASSLLIGFFIIPPSASKLAADCRNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Carg02856 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome