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Carg02860 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02860
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA ligase
Genome locationCarg_Chr09:2093598..2093831
RNA-Seq ExpressionCarg02860
SyntenyCarg02860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591551.1 hypothetical protein SDJN03_13897, partial [Cucurbita argyrosperma subsp. sororia]2.4e-36100Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]9.1e-2883.12Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]9.1e-2883.12Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]3.5e-2780.52Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P++RG+CRNLVARIGR  RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S+R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]5.4e-2883.12Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S+R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
TrEMBL top hitse value%identityAlignment
A0A1S3BVQ9 uncharacterized protein LOC1034937781.1e-2173.33Show/hide
Query:  MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFM
        M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF SRLP SPP     M
Subjt:  MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFM
A0A5A7VBS3 DNA ligase1.1e-2173.33Show/hide
Query:  MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFM
        M  +LP+LRG+CR+LVARI   S RRYHHS DFRYDPSSYALNFEDEQVRDD+E+PIRDF SRLP SPP     M
Subjt:  MAPELPKLRGLCRNLVARIG-RSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFM
A0A6J1CC83 uncharacterized protein LOC1110093869.6e-2375Show/hide
Query:  APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        A E  +LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDE  R DD++PIRDFASRLP SP +S  F  AK
Subjt:  APELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
A0A6J1FP70 uncharacterized protein LOC1114460224.4e-2883.12Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P+LRG+CRNLVARIGRS RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
A0A6J1J1H3 uncharacterized protein LOC1114804171.7e-2780.52Show/hide
Query:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
        MA E P++RG+CRNLVARIGR  RRYHHS DFRYDPSSYALNFEDEQVRDDDE+PIRDFASRLP SPP S+R   AK
Subjt:  MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G48020.1 unknown protein2.6e-0442.19Show/hide
Query:  RNLVARIGRSCRR---YHHSTDFRYDPSSYALNFEDEQVRDDDEY---PIRDFASRLPPSPPAS
        +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R    P AS
Subjt:  RNLVARIGRSCRR---YHHSTDFRYDPSSYALNFEDEQVRDDDEY---PIRDFASRLPPSPPAS
AT5G11070.1 unknown protein8.6e-0843.21Show/hide
Query:  KLRGLCRNLVARIGRSCR-----------RYHHST----DFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQR
        +LR  CR + +RI  +CR            +HHS     DF YDP SYALNFED  VR DD+    +F +RLP SP    R
Subjt:  KLRGLCRNLVARIGRSCR-----------RYHHST----DFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQR
AT5G35090.1 unknown protein7.8e-0941.77Show/hide
Query:  LPKLRGLCRNLVARI----------GRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD-DEYPIRDFASRLPPSPPASQR
        L K    C++L+ R+          G+  RR  H+ DF YDPSSYALNF+     D+ D +P+R+F++RLP SPP+S +
Subjt:  LPKLRGLCRNLVARI----------GRSCRRYHHSTDFRYDPSSYALNFEDEQVRDD-DEYPIRDFASRLPPSPPASQR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTC
GAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTA
TGGCGGCAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCAGAGCTCCCCAAGCTCCGAGGACTTTGCCGGAATCTTGTTGCTAGGATCGGCAGGAGTTGCCGACGGTACCATCACTCAACTGATTTCCGTTATGATCCTTC
GAGCTATGCCCTTAATTTCGAGGACGAACAGGTTCGCGACGATGATGAGTATCCAATTAGGGATTTCGCTTCCAGATTGCCACCGTCGCCGCCGGCTTCTCAGAGATTTA
TGGCGGCAAAATGA
Protein sequenceShow/hide protein sequence
MAPELPKLRGLCRNLVARIGRSCRRYHHSTDFRYDPSSYALNFEDEQVRDDDEYPIRDFASRLPPSPPASQRFMAAK