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Carg02886 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02886
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCoatomer subunit zeta
Genome locationCarg_Chr09:2247561..2250850
RNA-Seq ExpressionCarg02886
SyntenyCarg02886
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR022775 - AP complex, mu/sigma subunit
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]1.1e-7496.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_004136347.1 TSET complex member tstD [Cucumis sativus]1.1e-7497.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYT LGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]8.5e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_022936551.1 uncharacterized protein LOC111443125 [Cucurbita moschata]2.7e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

XP_023536268.1 uncharacterized protein LOC111797492 [Cucurbita pepo subsp. pepo]1.7e-75100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE
        APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE

TrEMBL top hitse value%identityAlignment
A0A1S3CRC6 Coatomer subunit zeta4.1e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5A7TBS4 Coatomer subunit zeta5.4e-7596.6Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGD+AVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A5D3E691 Coatomer subunit zeta4.1e-7597.28Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEEL+VASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFV+TS+IKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTER FLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A6J1F7S8 Coatomer subunit zeta1.3e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

A0A6J1IMX0 Coatomer subunit zeta1.3e-76100Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
        APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF

SwissProt top hitse value%identityAlignment
C0HLF1 TSET complex member tstD9.3e-1631.94Show/hide
Query:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDAC-
        M+ ++LI N+ GNI+  +++  +  E++  +   L +   D    +KNE+  V        V+T +GD+ +++ G +E DELAL++V F +  S+KD C 
Subjt:  MLLAVLIANSVGNILVERFH-GVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDAC-

Query:  GKAPTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK
         K  TE++F+++  K  L LDEI+  G L+  + + I+    LK
Subjt:  GKAPTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLK

Q54CA7 Probable coatomer subunit zeta-B8.2e-0428.78Show/hide
Query:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVVTSSIKDACGK
        A+++ ++ G  L   F+  P      L  +    KL  +  K   N EL +  +K   ++ +   DV ++VVG     +ELAL +V+  + S  K AC  
Subjt:  AVLIANSVGNILVERFHGVPAE--ERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKD-EYDELALAEVIFVVTSSIKDACGK

Query:  AP----TERSFLDKYGKICLCLDEIVWTGILENTEKDRI
              T+++FL+ Y  I L +DEIV  GI+   +++ I
Subjt:  AP----TERSFLDKYGKICLCLDEIVWTGILENTEKDRI

Q5NA06 Coatomer subunit zeta-32.5e-0525.95Show/hide
Query:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGKAPTE
        +L+ +S G  +  +++          ++F   + A   K +   E  +    S ++VY  + D+  +V G DE +EL LA V+   + +I          
Subjt:  VLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGKAPTE

Query:  RSFLDKYGKICLCLDEIVWTGILENTEKDRI
        R+ L+    I LCLDE+V  GI+  T+   I
Subjt:  RSFLDKYGKICLCLDEIVWTGILENTEKDRI

Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein9.8e-6980.82Show/hide
Query:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK
        M+LAVL ANSVGN+L+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VA HKSVYIVYT+LGDV++++VGKDEYDELALAE I+++T+++KD CGK
Subjt:  MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGK

Query:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE
         PTER FLDKYG+ICLCLDEIVW G+LENT+KDRIKRLIRLKPP+E
Subjt:  APTERSFLDKYGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTGGCTGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTTGAACGGTTCCATGGAGTTCCGGCAGAGGAACGATTGCATTGGCGATCCTTTCTAGTGAAGCT
AGGAGCAGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTTTGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTTGGCGATGTTGCAGTTTATGTTGTTG
GGAAGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAGTAACGTCATCGATAAAGGATGCCTGTGGCAAAGCTCCAACTGAGCGCTCGTTTCTCGACAAA
TATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCCTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAGCCTCCCAATGAGTT
TTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGGGCGCGAGCGAAAGTCTGGGATTGTTAGATTTGTTCCCAGGCTTCGAGGAGAGAGATTTTTTCCTTCAGAAATTCCGATCGAAGAGTTGAAGCAGGCGGCGAAAG
ATTAGGCATGTTGCTGGCTGTGCTGATCGCCAACTCCGTCGGCAACATTCTCGTTGAACGGTTCCATGGAGTTCCGGCAGAGGAACGATTGCATTGGCGATCCTTTCTAG
TGAAGCTAGGAGCAGATAATCTCAAAGGTGCAAAAAATGAAGAGCTCTTTGTTGCTTCACACAAGTCTGTATATATTGTTTACACTGTGCTTGGCGATGTTGCAGTTTAT
GTTGTTGGGAAGGATGAATATGATGAATTAGCTTTGGCAGAAGTGATCTTTGTAGTAACGTCATCGATAAAGGATGCCTGTGGCAAAGCTCCAACTGAGCGCTCGTTTCT
CGACAAATATGGAAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGACGGGCATCCTGGAGAACACGGAGAAAGACAGGATCAAGAGGCTGATAAGGTTAAAGCCTCCCA
ATGAGTTTTGATTAATGAAACGGCTGCATCAACTAATGCCAACATTCGTTTCAGCTCTGTGGAATAATCATCTTGAATGATAAGTTTACTCTACTACCCTATTATATTTG
GCTTTCATATTATTCTTTATCGAACTTGTTCGGATTTTAAGTTAGAACTCAAAGCTGTGATGAATTGGAGAAATTGTTTGGATTAAGATTTTAATGCGGGTAGGAAGCTT
GAGAATACAGATTACATTTGCATGTTTGTTCTCCTAGAATTCAGTGGGATTATGAAGTGAATTCGTAGTTGAGAACTTAAGAGTTGTGCTTGAAGTAGTATTTTTTTTTA
CTTCTTTTATGGTAAAAA
Protein sequenceShow/hide protein sequence
MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYIVYTVLGDVAVYVVGKDEYDELALAEVIFVVTSSIKDACGKAPTERSFLDK
YGKICLCLDEIVWTGILENTEKDRIKRLIRLKPPNEF