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Carg02908 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02908
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLeucine-rich repeat extensin-like protein
Genome locationCarg_Chr09:2382020..2384116
RNA-Seq ExpressionCarg02908
SyntenyCarg02908
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7409939.1 unnamed protein product [Spirodela intermedia]8.4e-1138.82Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------
        G+DLNHG+I GYLPEEL LL+D+    I                K +F     NN FAGKFPR VL  PS K+L L+FNEFE                  
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------

Query:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI
                        VSVIVLA N+FRGC+      MS T +E    NN +
Subjt:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI

CAB4110364.1 unnamed protein product [Lactuca saligna]1.3e-1139.31Show/hide
Query:  LEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVF----------------LSISKNNWFAGKFPRDVLNFPSHK
        +E    L+  K + +LG  +  +    GIDLNHG+I GYLPEEL LL D+    I  + F                L +S NN FAGKFP  VL  P  K
Subjt:  LEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVF----------------LSISKNNWFAGKFPRDVLNFPSHK

Query:  YLGLQFNEFEVSVIVLANKFRGCLA-----MSSTPSEGTAMNNSI
        +L L+FNEFE +     N+F GCL      MS T +E   +NN +
Subjt:  YLGLQFNEFEVSVIVLANKFRGCLA-----MSSTPSEGTAMNNSI

KAG7024484.1 Leucine-rich repeat extensin-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-101100Show/hide
Query:  MGVKSRNILRKYHSNKRWLKDTRKQVKPTVLLFSAMRNAQKLSFINKASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGY
        MGVKSRNILRKYHSNKRWLKDTRKQVKPTVLLFSAMRNAQKLSFINKASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGY
Subjt:  MGVKSRNILRKYHSNKRWLKDTRKQVKPTVLLFSAMRNAQKLSFINKASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGY

Query:  LPEELHLLSDMPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSVIVLANKFRGCLAMSSTPSEGTAMNNSI
        LPEELHLLSDMPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSVIVLANKFRGCLAMSSTPSEGTAMNNSI
Subjt:  LPEELHLLSDMPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSVIVLANKFRGCLAMSSTPSEGTAMNNSI

KAG8367404.1 hypothetical protein BUALT_Bualt16G0068400 [Buddleja alternifolia]3.8e-1141.91Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE---------------------------------
        GIDLNHG+I GYLPEEL LL+D+    +F+   L +S NN FAGKFP  VL+ P   YL ++FNEFE                                 
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE---------------------------------

Query:  -VSVIVLA-NKFRGCLAMS----STPSEGTAMNNSI
         VSVIVLA NKF GC+  S    S  +E   MNN +
Subjt:  -VSVIVLA-NKFRGCLAMS----STPSEGTAMNNSI

RWR77505.1 leucine-rich repeat extensin-like protein 4 [Cinnamomum micranthum f. kanehirae]4.9e-1136.75Show/hide
Query:  CQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSI---------------SKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----
        C L   +  +L   GIDLNHG+I GYLPEEL LL+D+    I  + F  I                 NN FAGKFP  VL  P+ K+L ++FNEFE    
Subjt:  CQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSI---------------SKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----

Query:  ------------------------------VSVIVLANK-FRGCLA-----MSSTPSEGTAMNNSI
                                      VSVIVLAN  FRGC+      MS T +E   MNN +
Subjt:  ------------------------------VSVIVLANK-FRGCLA-----MSSTPSEGTAMNNSI

TrEMBL top hitse value%identityAlignment
A0A3S3NY77 Leucine-rich repeat extensin-like protein 42.4e-1136.75Show/hide
Query:  CQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSI---------------SKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----
        C L   +  +L   GIDLNHG+I GYLPEEL LL+D+    I  + F  I                 NN FAGKFP  VL  P+ K+L ++FNEFE    
Subjt:  CQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVFLSI---------------SKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----

Query:  ------------------------------VSVIVLANK-FRGCLA-----MSSTPSEGTAMNNSI
                                      VSVIVLAN  FRGC+      MS T +E   MNN +
Subjt:  ------------------------------VSVIVLANK-FRGCLA-----MSSTPSEGTAMNNSI

A0A6N2MY05 Uncharacterized protein6.1e-1538.07Show/hide
Query:  KASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRM------QYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTI------------FKSVFLSIS---
        KA  ++HS +    SLE SH+++P+K + QLG +         +    GIDLNHG+I GYLPEEL LL D+    I            FK++ L      
Subjt:  KASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRM------QYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTI------------FKSVFLSIS---

Query:  KNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----------------------------------VSVIVLA-NKFRGCLAMS----STPSEGTAMNN
         NN FAGKFPR VL  PS K+L L+FNEFE                                  VSVIVLA NKF GC+  S    S  +E   MNN
Subjt:  KNNWFAGKFPRDVLNFPSHKYLGLQFNEFE----------------------------------VSVIVLA-NKFRGCLAMS----STPSEGTAMNN

A0A6S7P620 Uncharacterized protein6.3e-1239.31Show/hide
Query:  LEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVF----------------LSISKNNWFAGKFPRDVLNFPSHK
        +E    L+  K + +LG  +  +    GIDLNHG+I GYLPEEL LL D+    I  + F                L +S NN FAGKFP  VL  P  K
Subjt:  LEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSDMPFSTIFKSVF----------------LSISKNNWFAGKFPRDVLNFPSHK

Query:  YLGLQFNEFEVSVIVLANKFRGCLA-----MSSTPSEGTAMNNSI
        +L L+FNEFE +     N+F GCL      MS T +E   +NN +
Subjt:  YLGLQFNEFEVSVIVLANKFRGCLA-----MSSTPSEGTAMNNSI

A0A7I8JSH7 Hypothetical protein4.1e-1138.82Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------
        G+DLNHG+I GYLPEEL LL+D+    I                K +F     NN FAGKFPR VL  PS K+L L+FNEFE                  
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------

Query:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI
                        VSVIVLA N+FRGC+      MS T +E    NN +
Subjt:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI

A0A7I8LIR8 Hypothetical protein4.1e-1138.82Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------
        G+DLNHG+I GYLPEEL LL+D+    I                K +F     NN FAGKFPR VL  PS K+L L+FNEFE                  
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------

Query:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI
                        VSVIVLA N+FRGC+      MS T +E    NN +
Subjt:  ----------------VSVIVLA-NKFRGCLA-----MSSTPSEGTAMNNSI

SwissProt top hitse value%identityAlignment
O48809 Leucine-rich repeat extensin-like protein 27.4e-1042.35Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV
        GIDLNH ++ GYLP EL LL+D+    +                K +F     NN F GKFP  VL+ PS K+L L++NEFE S+
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV

Q4PSE6 Leucine-rich repeat extensin-like protein 71.3e-0933.99Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMP----------------FSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE-----------------
        G+DLN G+I G+LPEEL LL+D+                 FS +     L +S NN FAGKFP  V+  P  KYL L++NEFE                 
Subjt:  GIDLNHGNITGYLPEELHLLSDMP----------------FSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE-----------------

Query:  -----------------VSVIVLA-NKFRGCL-----AMSSTPSEGTAMNNSI
                         VSV+VLA N+F GC+      M  T +E   M+N +
Subjt:  -----------------VSVIVLA-NKFRGCL-----AMSSTPSEGTAMNNSI

Q9LHF1 Leucine-rich repeat extensin-like protein 42.3e-1147.06Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV
        GIDLNH +I GYLPEEL LL+D+    +                K +F     NN FAGKFP  VL+ PS K+L L+FNEFE +V
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV

Q9SN46 Leucine-rich repeat extensin-like protein 57.4e-1046.34Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE
        GIDLNH +I GYLP+EL LL+D+    I                K +F     NN FAG FP  VL  PS K+L L+FNEFE
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE

Q9T0K5 Leucine-rich repeat extensin-like protein 31.0e-1138.81Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------
        GIDLNH +I GYLPEEL LLSD+    +                K +F     NN FAGKFP  VL  PS K+L L+FNEFE                  
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------

Query:  ----------------VSVIVLA-NKFRGCLAMS
                        VSVIVLA N+F GC+  S
Subjt:  ----------------VSVIVLA-NKFRGCLAMS

Arabidopsis top hitse value%identityAlignment
AT1G62440.1 leucine-rich repeat/extensin 25.2e-1142.35Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV
        GIDLNH ++ GYLP EL LL+D+    +                K +F     NN F GKFP  VL+ PS K+L L++NEFE S+
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV

AT3G24480.1 Leucine-rich repeat (LRR) family protein1.6e-1247.06Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV
        GIDLNH +I GYLPEEL LL+D+    +                K +F     NN FAGKFP  VL+ PS K+L L+FNEFE +V
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSV

AT4G13340.1 Leucine-rich repeat (LRR) family protein7.3e-1338.81Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------
        GIDLNH +I GYLPEEL LLSD+    +                K +F     NN FAGKFP  VL  PS K+L L+FNEFE                  
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE------------------

Query:  ----------------VSVIVLA-NKFRGCLAMS
                        VSVIVLA N+F GC+  S
Subjt:  ----------------VSVIVLA-NKFRGCLAMS

AT4G18670.1 Leucine-rich repeat (LRR) family protein5.2e-1146.34Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE
        GIDLNH +I GYLP+EL LL+D+    I                K +F     NN FAG FP  VL  PS K+L L+FNEFE
Subjt:  GIDLNHGNITGYLPEELHLLSDMPFSTI---------------FKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFE

AT4G28380.1 Leucine-rich repeat (LRR) family protein5.2e-1146.34Show/hide
Query:  GIDLNHGNITGYLPEELHLLSDMP--------FSTIFKSVFLSIS-------KNNWFAGKFPRDVLNFPSHKYLGLQFNEFE
        GIDLNHG+I G+LPE + LLSD+         F  I    F ++S        NN F G FP  VL  PS KYL L++NEFE
Subjt:  GIDLNHGNITGYLPEELHLLSDMP--------FSTIFKSVFLSIS-------KNNWFAGKFPRDVLNFPSHKYLGLQFNEFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTAAAGAGTAGGAATATTCTTAGGAAATATCACAGCAACAAAAGGTGGCTAAAGGACACGAGGAAGCAAGTTAAGCCAACTGTCCTACTATTCTCAGCCATGAG
GAACGCTCAAAAATTATCCTTCATAAACAAAGCGAGCTTGCAGGTTCACAGTCTGAGCACTTGCCCTATAAGCTTGGAGAAAAGCCATTATCTCAAACCTGCTAAACATA
ACTGCCAATTGGGTAGGATGCAATATGTGCTACTGTACAGGTGCGGCATTGATCTAAACCATGGAAACATTACTGGATATCTTCCTGAAGAGCTACACCTTCTATCTGAT
ATGCCATTTTCCACAATTTTTAAATCAGTTTTTCTATCAATTTCCAAAAACAACTGGTTTGCAGGGAAATTTCCTCGTGATGTTCTAAATTTCCCAAGTCATAAATATCT
TGGCCTTCAGTTCAATGAGTTTGAAGTTTCTGTGATTGTTCTTGCCAATAAGTTTCGTGGATGTCTTGCCATGTCAAGTACACCGAGTGAAGGAACCGCAATGAACAATA
GTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTAAAGAGTAGGAATATTCTTAGGAAATATCACAGCAACAAAAGGTGGCTAAAGGACACGAGGAAGCAAGTTAAGCCAACTGTCCTACTATTCTCAGCCATGAG
GAACGCTCAAAAATTATCCTTCATAAACAAAGCGAGCTTGCAGGTTCACAGTCTGAGCACTTGCCCTATAAGCTTGGAGAAAAGCCATTATCTCAAACCTGCTAAACATA
ACTGCCAATTGGGTAGGATGCAATATGTGCTACTGTACAGGTGCGGCATTGATCTAAACCATGGAAACATTACTGGATATCTTCCTGAAGAGCTACACCTTCTATCTGAT
ATGCCATTTTCCACAATTTTTAAATCAGTTTTTCTATCAATTTCCAAAAACAACTGGTTTGCAGGGAAATTTCCTCGTGATGTTCTAAATTTCCCAAGTCATAAATATCT
TGGCCTTCAGTTCAATGAGTTTGAAGTTTCTGTGATTGTTCTTGCCAATAAGTTTCGTGGATGTCTTGCCATGTCAAGTACACCGAGTGAAGGAACCGCAATGAACAATA
GTATCTAA
Protein sequenceShow/hide protein sequence
MGVKSRNILRKYHSNKRWLKDTRKQVKPTVLLFSAMRNAQKLSFINKASLQVHSLSTCPISLEKSHYLKPAKHNCQLGRMQYVLLYRCGIDLNHGNITGYLPEELHLLSD
MPFSTIFKSVFLSISKNNWFAGKFPRDVLNFPSHKYLGLQFNEFEVSVIVLANKFRGCLAMSSTPSEGTAMNNSI