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Carg02921 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02921
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribosomal RNA small subunit methyltransferase H
Genome locationCarg_Chr09:2468781..2472010
RNA-Seq ExpressionCarg02921
SyntenyCarg02921
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR002903 - Ribosomal RNA small subunit methyltransferase H


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591615.1 hypothetical protein SDJN03_13961, partial [Cucurbita argyrosperma subsp. sororia]6.2e-117100Show/hide
Query:  MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL
        MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL
Subjt:  MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPL

Query:  CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL
        CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL
Subjt:  CSFVDCTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSL

Query:  VMNLLICEWILRIMPGKSKSRGHS
        VMNLLICEWILRIMPGKSKSRGHS
Subjt:  VMNLLICEWILRIMPGKSKSRGHS

KAG6608197.1 hypothetical protein SDJN03_01539, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4672.67Show/hide
Query:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS
        ++ +L LALVKEK RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS
Subjt:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS

Query:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
          F EDSDL A+ VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

KAG7037555.1 rsmH, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4672.67Show/hide
Query:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS
        ++ +L LALVKEK RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS
Subjt:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS

Query:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
          F EDSDL A+ VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

XP_022940206.1 uncharacterized protein LOC111445901 [Cucurbita moschata]2.0e-4672.67Show/hide
Query:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS
        ++ +L LALVKEK RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS
Subjt:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS

Query:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
          F EDSDL A+ VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

XP_038896155.1 ribosomal RNA small subunit methyltransferase H [Benincasa hispida]1.6e-4855.84Show/hide
Query:  SELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLP------------------------------------------------LALVKEK-RTRST
        SEL EMAFRSSMAK SLFS+SP  +       FT    P                                                LALVKEK RTRST
Subjt:  SELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLP------------------------------------------------LALVKEK-RTRST

Query:  KEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLE------NGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFK
        K+FDE A+Q GDTAAHIPV L+EVLDVFS SSGRPL SFVDCTVGA   S++ ++   E          PIAL KA+DRISA FSEDSDL A+IVLKNFK
Subjt:  KEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLE------NGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFK

Query:  YMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        Y+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  YMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

TrEMBL top hitse value%identityAlignment
A0A0A0LDT0 Uncharacterized protein1.5e-4452.65Show/hide
Query:  MAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLP------------------------------------------------LALVKEK-RTRSTKEFDE
        MAFRSS+AK SLFS S   +     + FT    P                                                LALVKEK RTRSTKEFDE
Subjt:  MAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLP------------------------------------------------LALVKEK-RTRSTKEFDE

Query:  IAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSL
         A+  GDTAAHIPV L+EVLDVF++SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSEDSDL A+IVLKNFKY+KSL
Subjt:  IAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSL

Query:  LADSDEKPLDPGVDGILMYLGMSSMQ
        LADSDEKPLDPGVDG++M LGMSSMQ
Subjt:  LADSDEKPLDPGVDGILMYLGMSSMQ

A0A1S3CR02 ribosomal RNA small subunit methyltransferase H1.8e-4573.61Show/hide
Query:  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSED
        LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSED
Subjt:  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSED

Query:  SDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        SDL A+IVLKNFKY+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  SDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A5A7T697 Ribosomal RNA small subunit methyltransferase H1.8e-4573.61Show/hide
Query:  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSED
        LALVKEK RTRSTKEFDE A+  GDTAAHIPV L+EVLDVFS+SSGRPL SFVDCTVGA   S++ ++        +     PIAL KA+DRIS FFSED
Subjt:  LALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVE------ILLENGSRPIALHKAEDRISAFFSED

Query:  SDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
        SDL A+IVLKNFKY+KSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  SDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A6J1FNN0 uncharacterized protein LOC1114459019.5e-4772.67Show/hide
Query:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS
        ++ +L LALVKEK RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGRPL SFVDCTVGA   S++       ++  +     PIAL KA+DRIS
Subjt:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTS------RVEILLENGSRPIALHKAEDRIS

Query:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
          F EDSDL A+ VLKNFKYMKSLLADSDEKPLDPGVDGILM LGMSSMQ
Subjt:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

A0A6J1IWR1 uncharacterized protein LOC1114812931.5e-4470.67Show/hide
Query:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRIS
        ++ +L LALVKEK RTRSTKEFDE AVQFGDTAAHIPV L+EVLDVFSASSGR L SFVDCTVGA   S+      S ++  +     PIAL KA+DRIS
Subjt:  TAENLPLALVKEK-RTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSST------SRVEILLENGSRPIALHKAEDRIS

Query:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
          F EDSDL  + VLKNFKYMK LLADSDEKPL+PGVDGILM LGMSSMQ
Subjt:  AFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ

SwissProt top hitse value%identityAlignment
C6D563 Ribosomal RNA small subunit methyltransferase H1.9e-0433.61Show/hide
Query:  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPL
        HI V L E +D  +   G     +VDCT+G    S  R+   L  G R I       AL  A  R++ +          +V  NF+Y++ +L   D   +
Subjt:  HIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGSRPI-------ALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPL

Query:  D--PGVDGILMYLGMSSMQ
        D  P VDGIL  LG+SS Q
Subjt:  D--PGVDGILMYLGMSSMQ

Arabidopsis top hitse value%identityAlignment
AT5G10910.1 mraW methylase family protein4.1e-1843.88Show/hide
Query:  KEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIALHKAEDRISAFFSEDSDLNA
        +++RTRS++ + E+A      ++H+PV L EVLD+FS+     L SFVDCT+GA   S+S ++   E  +       P+A       I +       L A
Subjt:  KEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVDCTVGADNSSTSRVEILLENGS------RPIALHKAEDRISAFFSEDSDLNA

Query:  FIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ
         IVLKNFKY+KS++AD+  + LD GVDGILM LGMSSMQ
Subjt:  FIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCG
TTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATC
GCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGAT
TGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCT
TTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGA
GTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATC
CTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTAACAATCTCATTTTCTGATCTTCTGATCTTATCGGAGCTGTTGGAAATGGCTTTTAGATCATCAATGGCGAAGCTCTCGTTGTTTTCTTTTTCTCCG
TTTACAGCATTTGGTCTTCATCTCTACTGCTTCACTGCCGAGAATCTTCCGTTAGCTTTGGTGAAGGAGAAAAGGACTCGCTCCACCAAGGAGTTTGATGAGATC
GCTGTCCAGTTCGGCGACACTGCTGCTCACATCCCGGTGACGCTTTCGGAAGTATTGGACGTATTCTCTGCTTCTTCCGGAAGGCCGCTATGCTCCTTTGTAGAT
TGCACCGTCGGTGCAGATAATTCTAGCACATCCAGAGTTGAAATTTTACTTGAGAATGGAAGTCGTCCAATTGCACTTCATAAGGCCGAAGATCGGATTAGTGCT
TTCTTCAGCGAGGATTCTGATTTGAATGCATTCATAGTTCTGAAGAACTTTAAATACATGAAATCGCTACTGGCTGACTCAGACGAGAAACCTTTAGATCCTGGA
GTTGACGGAATTTTGATGTATTTGGGAATGTCATCCATGCAGGCTGCTTCGGTGGACGGGGAATTAGTGTCATTGGTGATGAACCTCTTGATATGCGAATGGATC
CTCAGGATTATGCCAGGCAAGTCTAAAAGCAGAGGACATTCTTAACAGGTGGCCGGAAATAGAAGTGGGGTGTATCTTGCGGGTTTATGGAGAATAAAGTAACTG
GTATTCACTCCAGAATAAGATCGTAAAAGCTCGATCACAGGGGGGTGGACTGCATTTCTCCAGTGAATTAGTTGATCTTCTTATCCGAAAATCCACTTTGGGCTG
AAAAGGTATTAGAAGACGCGGCCCTGTGTATACATATCATTTCTTTCCACAGTTCGGAGGGTAGGGTTGTGAAGCAAACATTTCTGGATATCATAATCCCGAAAA
CCGAAGGAGATGACTGATCTATAGAAGAAGAGAGGTTGAATCGGCTCTGTAGGAATGCTTAAGCTCAAGGTAATTCGGAAGAATAATGCTGTCTTCTGATAGGAA
ACCAGTGAGTGTGCGGACTTCATTATTATGGCCATCTGGTAGGGTGCACATCAAGGTTAGTACCAGTCACATCTATTTCCTTTTCATGAACGGCTCTTTTCTCTC
TACGTTTATATTCACTTTCTAATTTCATTTTTTTTTTTCGATTATCAGTTTGTTTGA
Protein sequenceShow/hide protein sequence
MALTISFSDLLILSELLEMAFRSSMAKLSLFSFSPFTAFGLHLYCFTAENLPLALVKEKRTRSTKEFDEIAVQFGDTAAHIPVTLSEVLDVFSASSGRPLCSFVD
CTVGADNSSTSRVEILLENGSRPIALHKAEDRISAFFSEDSDLNAFIVLKNFKYMKSLLADSDEKPLDPGVDGILMYLGMSSMQAASVDGELVSLVMNLLICEWI
LRIMPGKSKSRGHS