; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02982 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02982
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSKI/DACH domain-containing protein 1
Genome locationCarg_Chr09:2795154..2795627
RNA-Seq ExpressionCarg02982
SyntenyCarg02982
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591676.1 Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.1e-5994.78Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCS+SYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPR
        RSMAFAPRLRRGTESDSGKNNNLG  S I  RP+
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPR

KAG7024556.1 hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-79100Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

XP_022936383.1 uncharacterized protein LOC111443018 [Cucurbita moschata]4.7e-7999.36Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCS+SYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

XP_022975755.1 uncharacterized protein LOC111476165 [Cucurbita maxima]4.1e-7594.9Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFH+SKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVS  SSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        RSMAFAPRL+R TESDSGKN+NLGFWS+ LRRPRRKIMEFEEVLMHSRTVVQRDVHG
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

XP_038899400.1 uncharacterized protein LOC120086706 [Benincasa hispida]1.7e-5275.45Show/hide
Query:  MANFHRSKSDYDDRRR----CKRHPKHHQSPGVCSLCLAEKLSQIVS----TKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRK-AFVF
        MANFH+SKSDYD  RR    CKRHPKHHQSPGVCSLCL EKLS+I+S    T SSRK SDSLSSS SSSYYSSASS SSCSSPN  Y YNTDRRK AFVF
Subjt:  MANFHRSKSDYDDRRR----CKRHPKHHQSPGVCSLCLAEKLSQIVS----TKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRK-AFVF

Query:  SASSIFKKSRSM-AFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        SASSIFKKS+SM A  PRLR  TES+S K +NLGFWS+ L RPRRK MEF++VLMHSRT+V+R+VHG
Subjt:  SASSIFKKSRSM-AFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

TrEMBL top hitse value%identityAlignment
A0A1S3CQP1 SKI/DACH domain-containing protein 11.1e-4164.64Show/hide
Query:  MANFHRSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSRKVSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD--
        MANFH SKSDYD          +   CK HP HHQSPGVCSLCL EKLS+I+ST   S  K+S SLSSSCSSSYYSS +SS SSCSS   PY  YN+D  
Subjt:  MANFHRSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSRKVSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD--

Query:  --RRKAFV-FSASSIFKKSRSMAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
          R+KAFV FSASSIFKKS+SMA   RL+RG  TESD GK   NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VHG
Subjt:  --RRKAFV-FSASSIFKKSRSMAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

A0A6J1FD38 uncharacterized protein LOC1114430182.3e-7999.36Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCS+SYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

A0A6J1FKF2 uncharacterized protein LOC1114460762.5e-4669.64Show/hide
Query:  MANFHRSKSDYDDRRR------CKRHPKHHQSPGVCSLCLAEKLSQIVS-TKSSRKVSDSLSSSCSS--SYYSSASSCSSCSSPNPPYGYNTDRRKAFVF
        MAN H+SKSDYDD RR      CKRHPKH QSPGVCSLCL EKLSQI+S T SSRK+SDSLSSS S   SYYSS SSCSSCSSPN PY   T        
Subjt:  MANFHRSKSDYDDRRR------CKRHPKHHQSPGVCSLCLAEKLSQIVS-TKSSRKVSDSLSSSCSS--SYYSSASSCSSCSSPNPPYGYNTDRRKAFVF

Query:  SASSIFKKSRSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG
         ASSI+KKSRSMAFA R RRGT+SDSGK ++LGFWS+ L RPRRK ME EE LMHSR+  VVQ +VHG
Subjt:  SASSIFKKSRSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG

A0A6J1IHL9 uncharacterized protein LOC1114761652.0e-7594.9Show/hide
Query:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
        MANFH+SKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVS  SSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS
Subjt:  MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKS

Query:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG
        RSMAFAPRL+R TESDSGKN+NLGFWS+ LRRPRRKIMEFEEVLMHSRTVVQRDVHG
Subjt:  RSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG

A0A6J1J366 uncharacterized protein LOC1114809271.6e-4570.06Show/hide
Query:  MANFHRSKSDYDDRRR-----CKRHPKHHQSPGVCSLCLAEKLSQIVS-TKSSRKVSDSLSSSC--SSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFS
        MAN H+SKSDYDD RR     CKRHPKH QSPGVCSLCL EKLSQI+S T SSRK SDSLSSS   SSSYYSS SSCSSCSSPN PY   T         
Subjt:  MANFHRSKSDYDDRRR-----CKRHPKHHQSPGVCSLCLAEKLSQIVS-TKSSRKVSDSLSSSC--SSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFS

Query:  ASSIFKKSRSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG
        ASSI+KKSRS+AFA R RRG +SDSGK ++LGFWS+ L RPRRK ME EE LMHSRT  VVQ +VHG
Subjt:  ASSIFKKSRSMAFAPRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRT--VVQRDVHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22470.1 unknown protein5.1e-0741.28Show/hide
Query:  RSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKSRSMAF
        RS S  D    CK+HPKH QSPG+CSLCL E LS     K S +  D  SS  SSS   + SSCSS SS         +    F  +A S +  S S   
Subjt:  RSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKSRSMAF

Query:  APRLRRGTE
        +P   R +E
Subjt:  APRLRRGTE

AT1G35210.1 unknown protein1.6e-0839.5Show/hide
Query:  CKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRK-----VSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSAS--------SIFKKSRSM
        CK+HPKH QSPGVCSLCL E+LS  +   SSR+     +  + SS+ SS     +SS SSC SP        DRR+  + S          S   KSRS+
Subjt:  CKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRK-----VSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSAS--------SIFKKSRSM

Query:  AF----APRLRRGTESDSG
        A+      R ++ T+++SG
Subjt:  AF----APRLRRGTESDSG

AT1G72240.1 unknown protein1.5e-0647.5Show/hide
Query:  SKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQI-----------VSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSP
        S S+ D+   CK+H KH QSPG+CSLCL E+LS++           V T +    + + SSS  SS YSS SS SSCSSP
Subjt:  SKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQI-----------VSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACTTTCACAGATCCAAATCCGACTACGACGATCGCCGCCGCTGCAAACGGCATCCGAAGCACCACCAATCTCCCGGCGTTTGCTCGCTCTGTTTGGCC
GAAAAGCTCTCGCAAATCGTCTCCACGAAATCGTCACGTAAAGTCTCCGATTCTCTTTCTTCTTCCTGTTCCTCTTCTTATTACTCCTCTGCTTCCTCTTGTTCT
TCCTGTTCTTCGCCGAATCCTCCTTACGGTTACAATACGGATCGCCGTAAGGCTTTCGTGTTTTCGGCGTCTTCGATCTTTAAAAAGAGTAGATCGATGGCGTTC
GCGCCGAGATTGAGACGAGGAACAGAGAGCGATAGTGGAAAGAATAATAACCTAGGGTTTTGGTCGAAGATTCTTAGACGGCCGAGACGGAAGATAATGGAATTT
GAAGAGGTTTTGATGCACTCGAGAACTGTCGTACAGAGGGACGTGCATGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAACTTTCACAGATCCAAATCCGACTACGACGATCGCCGCCGCTGCAAACGGCATCCGAAGCACCACCAATCTCCCGGCGTTTGCTCGCTCTGTTTGGCC
GAAAAGCTCTCGCAAATCGTCTCCACGAAATCGTCACGTAAAGTCTCCGATTCTCTTTCTTCTTCCTGTTCCTCTTCTTATTACTCCTCTGCTTCCTCTTGTTCT
TCCTGTTCTTCGCCGAATCCTCCTTACGGTTACAATACGGATCGCCGTAAGGCTTTCGTGTTTTCGGCGTCTTCGATCTTTAAAAAGAGTAGATCGATGGCGTTC
GCGCCGAGATTGAGACGAGGAACAGAGAGCGATAGTGGAAAGAATAATAACCTAGGGTTTTGGTCGAAGATTCTTAGACGGCCGAGACGGAAGATAATGGAATTT
GAAGAGGTTTTGATGCACTCGAGAACTGTCGTACAGAGGGACGTGCATGGCTGA
Protein sequenceShow/hide protein sequence
MANFHRSKSDYDDRRRCKRHPKHHQSPGVCSLCLAEKLSQIVSTKSSRKVSDSLSSSCSSSYYSSASSCSSCSSPNPPYGYNTDRRKAFVFSASSIFKKSRSMAF
APRLRRGTESDSGKNNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG