; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg02988 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg02988
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionisoamylase 3, chloroplastic isoform X2
Genome locationCarg_Chr09:2837826..2839632
RNA-Seq ExpressionCarg02988
SyntenyCarg02988
Gene Ontology termsGO:0005977 - glycogen metabolic process (biological process)
GO:0019156 - isoamylase activity (molecular function)
InterPro domainsIPR013780 - Glycosyl hydrolase, all-beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024561.1 Isoamylase 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-64100Show/hide
Query:  MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
        MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST
Subjt:  MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGST

Query:  YNLAPYSSILLKAKLENELL
        YNLAPYSSILLKAKLENELL
Subjt:  YNLAPYSSILLKAKLENELL

XP_022936809.1 isoamylase 3, chloroplastic isoform X1 [Cucurbita moschata]8.9e-3898.75Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

XP_022936810.1 isoamylase 3, chloroplastic isoform X2 [Cucurbita moschata]8.9e-3898.75Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

XP_022975928.1 isoamylase 3, chloroplastic isoform X1 [Cucurbita maxima]4.4e-3797.5Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

XP_023535183.1 isoamylase 3, chloroplastic [Cucurbita pepo subsp. pepo]4.4e-3797.5Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

TrEMBL top hitse value%identityAlignment
A0A0A0LE02 Aamy domain-containing protein1.6e-3285Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHD NGEDVYLAFNAH+YFV+VSLPSPPT RKWFRVVDTNLESP DFVLDGI G+GS+YN+APYSSILLKA LEN+LL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

A0A6J1F9D1 isoamylase 3, chloroplastic isoform X14.3e-3898.75Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

A0A6J1FES0 isoamylase 3, chloroplastic isoform X24.3e-3898.75Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

A0A6J1II39 isoamylase 3, chloroplastic isoform X22.1e-3797.5Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

A0A6J1IKM9 isoamylase 3, chloroplastic isoform X12.1e-3797.5Show/hide
Query:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
        Y LHDGNGEDVYLAFNAHDYFVSVSLPSPPT RKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL
Subjt:  YRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAKLENELL

SwissProt top hitse value%identityAlignment
B9G434 Isoamylase 3, chloroplastic5.1e-2061.33Show/hide
Query:  YRLHDGN-GEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK
        + +HD N G D+YLAFNAHDYFV   +P PP ++ W RVVDTNLESP D V +G+   G  Y +APYSSILLKAK
Subjt:  YRLHDGN-GEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK

P10342 Isoamylase6.1e-0534.67Show/hide
Query:  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGSTYNLAPYSSILLKAK
        G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+TY     S +LL +K
Subjt:  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGSTYNLAPYSSILLKAK

P26501 Isoamylase6.1e-0534.67Show/hide
Query:  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGSTYNLAPYSSILLKAK
        G+   +Y+A+N     V+ +LP+PP+  +W+RV DT    +    FV  G    I G G+TY     S +LL +K
Subjt:  GNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTN--LESPQDFVLDG----IRGIGSTYNLAPYSSILLKAK

Q8L735 Isoamylase 2, chloroplastic1.2e-0532.69Show/hide
Query:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS
        WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW R+VDT L  P  F ++G   +          Y + PYS 
Subjt:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS

Query:  ILLK
         L +
Subjt:  ILLK

Q9M0S5 Isoamylase 3, chloroplastic1.7e-2361.33Show/hide
Query:  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK
        + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  TYN+AP+SSILL++K
Subjt:  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK

Arabidopsis top hitse value%identityAlignment
AT1G03310.1 debranching enzyme 18.7e-0732.69Show/hide
Query:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS
        WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW R+VDT L  P  F ++G   +          Y + PYS 
Subjt:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS

Query:  ILLK
         L +
Subjt:  ILLK

AT1G03310.2 debranching enzyme 18.7e-0732.69Show/hide
Query:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS
        WE   S F AL+I         +S+   ++    D+++ FNA D+  SV LPS P   KW R+VDT L  P  F ++G   +          Y + PYS 
Subjt:  WE---SMFYALKI---------SSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGS-------TYNLAPYSS

Query:  ILLK
         L +
Subjt:  ILLK

AT4G09020.1 isoamylase 31.2e-2461.33Show/hide
Query:  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK
        + LHDG  G D+Y+AFNAHDYFV   +P PP  ++WFRV DTNLESP DFV +G+ G+  TYN+AP+SSILL++K
Subjt:  YRLHDG-NGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAPYSSILLKAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTG
AAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCA
ACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCC
TATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATTGGCCTTTTGCTGCCCACCTTCTTGGGACTGGCTTCATGTAGATGTGCACAAAATTGGTCATGCAAACTGTTTTGGGAATCTATGTTCTATGCTTTG
AAGATTTCTAGTATTTACAGGCTTCATGATGGTAATGGAGAAGACGTTTACTTGGCATTCAATGCTCATGATTATTTTGTCAGTGTTTCATTACCCTCTCCTCCA
ACAAATCGAAAATGGTTCCGTGTGGTGGACACCAATCTGGAGTCTCCCCAAGACTTTGTATTGGATGGCATTCGGGGCATTGGAAGCACCTATAATTTGGCTCCC
TATTCCTCAATTCTTCTGAAAGCCAAGTTAGAAAATGAACTTCTTTGATACTAACTCTATATTTAATCAAACCATTATTAGGCAGATGAATCAAGTTCTGTACAA
CATGACAATCGAAGTATCGTGGAAGAAATAAATTATGCAATCTAATGGAGGACGTGTAGAGCTATCCTCGGCATGGAATTCAGGTACCTGTTTTATGTTTATAGC
ATATTGGGAAAGAATTTTCTTTTTCTTCTGAAACAGATTAGAGTGTTGTTCATTGTTGCAATTACTTTCAACAATTAGATATAAGTGAATAAAATTATGATCATT
AGGTATCTATTTTAGAAGGTCTTTTTTATGATTTTTGTTACTTTCGTCTTTGACCGATTGAAATGCATCCTTCTAAAATAAATGGAAGTCTTAGCAAACTTCCTT
TTCTCAAGAAACTTGATCTTGATTCATGTAGAAACTCGATCTTGATTCGTGTAGAAACTCAAGATCTATGGTCCTAGTTGAAATAAAGAGAACAAAGTTCATACC
GGTATAATTTCTTAGTTGAGTGAAATACCAGAGAATTATTAGGTACCATACGAGCAGGTCTGACAAAAATCTCTGTATAACCTCCTCAATTTCTCCATAAAAGAG
CTAGATTAATTTTAACCCTCGGTATTGAAACAAAATTGTTAGGAATACAAACATTATCATTCATTAGTTAGAAGTGTCCTCACAAGGTTTATGAGAGTTTTGCTT
GGACGAATATTTGAATATGAAACAAAAAATGATGAGCCTCGATTTCTTAGCAATATGGTTTGGGTGATAAAGATCATAGCCACTACTCTTCTTTCTAATAGAAAG
ATTACGAGGATAGCTCGAGATAGCTCAAGGGACCTTTATGATGTGATAAAGAGTGGTCTTCATCAACCATTTCACATTCATGGATTGAACTCTAATAGAATATTC
TCCGAACAAAAGAAAAATAGAATTAGAACAAATTCTTAACCTAGAAAAACTGGATGGTTATTGTTTGGTACTTTGTTCAACGACAAAATTATAAACCGTCCGGTG
AAATTTATGTTAGTATTATGTCAAATAAAATGAATACAATAATATTAGATAGTAATCATATGGAAATCTAGACTACAACAACAGCCTACAGCGCTACAGGTTATA
TATA
Protein sequenceShow/hide protein sequence
MPIGLLLPTFLGLASCRCAQNWSCKLFWESMFYALKISSIYRLHDGNGEDVYLAFNAHDYFVSVSLPSPPTNRKWFRVVDTNLESPQDFVLDGIRGIGSTYNLAP
YSSILLKAKLENELL