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Carg03032 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03032
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome locationCarg_Chr09:3115988..3119440
RNA-Seq ExpressionCarg03032
SyntenyCarg03032
Gene Ontology termsGO:0006450 - regulation of translational fidelity (biological process)
GO:0032543 - mitochondrial translation (biological process)
GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domainsIPR003837 - Glu-tRNAGln amidotransferase C subunit
IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024605.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-63100Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVWAAPDNTGGVNQRNDAPE
        MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVWAAPDNTGGVNQRNDAPE
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVWAAPDNTGGVNQRNDAPE

Query:  TFENREAMIRAVPAFDEPYIKVPKVLNKD
        TFENREAMIRAVPAFDEPYIKVPKVLNKD
Subjt:  TFENREAMIRAVPAFDEPYIKVPKVLNKD

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]1.2e-4068.97Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSKALP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STASG++ASLQPPDV RLA+TARISLTP +VEE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G NQRND PETFENREAMI AVP FDEPYIKVPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

XP_022975686.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]6.8e-5282.07Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAAPDNT---------
        MGSK+LPVLKGASSFSSLKRRIFISSGLH PSVSNIRIRKC TASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV  W     T         
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAAPDNT---------

Query:  -----GGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
             GG NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNK+
Subjt:  -----GGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

XP_023534971.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]2.5e-5484.14Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSK+LPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTA GIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +TGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

XP_038897282.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida]1.2e-4071.03Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSKALP+LKGASS  SLK RIFIS+GLHS   S IRIRKCSTAS I+ASLQPPDV RLAETARISLTP +VEE APKI QV  W              A
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G NQRND PETFENREAMI AVP FDEPYIKVPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

TrEMBL top hitse value%identityAlignment
A0A0A0LJU5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial5.5e-3967.59Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSKALP+LKGASSF SLKR+IFIS+  HS  VSNI IR  STASGI ASLQPPDV RLA+TARISLTP + EE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G +QRND PETFENREAMI AVP FDEPYIKVPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial5.9e-4168.97Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSKALP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STASG++ASLQPPDV RLA+TARISLTP +VEE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G NQRND PETFENREAMI AVP FDEPYIKVPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial5.9e-4168.97Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGSKALP+LKGASSF SLKR+IFIS+  HS  VSNI IRK STASG++ASLQPPDV RLA+TARISLTP +VEE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G NQRND PETFENREAMI AVP FDEPYIKVPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.3e-3564.83Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGS AL +LKGASS  SL  +IFIS+ L+S  VS+IRIRKCSTA GI ASLQPPDV RLAETARISL P EVEE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G NQR+D  ETFENREAMI AVP FDEPYI+VPKVLNK+
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

A0A6J1IEW2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial3.3e-5282.07Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAAPDNT---------
        MGSK+LPVLKGASSFSSLKRRIFISSGLH PSVSNIRIRKC TASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV  W     T         
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAAPDNT---------

Query:  -----GGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
             GG NQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNK+
Subjt:  -----GGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

SwissProt top hitse value%identityAlignment
A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial2.8e-1644.19Show/hide
Query:  LKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W---------------AAPDNTGGVNQRNDAPE
        L RR  +SS   SP      I   + A+G   +L+PPD+ RLA  ARISL+P E EE APKI QV  W                      G + R D PE
Subjt:  LKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W---------------AAPDNTGGVNQRNDAPE

Query:  TFENREAMIRAVPAFDEPYIKVPKVLNKD
        TF NR+A+I +VP++D+PYIKVP+VLNK+
Subjt:  TFENREAMIRAVPAFDEPYIKVPKVLNKD

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial1.5e-2249.31Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAA-------------
        MGS+A+ +LKG S          ++    SP+ S  R    +TA+G  +SL+PPDV RLAETARISLTP +VEE  PKI QV  W A             
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--WAA-------------

Query:  PDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
          +T G N R+D PETFENREA+I AVP +++PY+KVPKVLNK+
Subjt:  PDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial5.5e-2046.58Show/hide
Query:  MGSKALPVLKGASSFSSLKRRI-FISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------
        MGS+AL +LK A     LK +I  ++    +P+   +  R+ S  +   +SLQPPDV RLAETARISL   EVEE APKI QV  W              
Subjt:  MGSKALPVLKGASSFSSLKRRI-FISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------

Query:  AAPDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
        A   ++ G N R+D PETF  REA+I AVP++++PY+KVPKVLNK+
Subjt:  AAPDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial3.1e-2347.59Show/hide
Query:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A
        MGS+AL +LK  ++    +  +F S    S ++     R  ST S ++    PPD+ RLAETARISLTP EVEE APKI QV  W              +
Subjt:  MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------A

Query:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD
           +T G N R+D+PETFENREA+I A+P+++EPY+KVPKVLNKD
Subjt:  APDNTGGVNQRNDAPETFENREAMIRAVPAFDEPYIKVPKVLNKD

F4JV80 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial9.7e-1743.86Show/hide
Query:  SVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------AAPDNTGGVNQRNDAPETFENREAMIRAVPAF
        S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V  W              A      G N R DAPETF+NR+++  ++P+F
Subjt:  SVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------AAPDNTGGVNQRNDAPETFENREAMIRAVPAF

Query:  DEPYIKVPKVLNKD
        ++ Y+KVPK+LNK+
Subjt:  DEPYIKVPKVLNKD

Arabidopsis top hitse value%identityAlignment
AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).6.9e-1843.86Show/hide
Query:  SVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------AAPDNTGGVNQRNDAPETFENREAMIRAVPAF
        S  N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KI +V  W              A      G N R DAPETF+NR+++  ++P+F
Subjt:  SVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQV--W--------------AAPDNTGGVNQRNDAPETFENREAMIRAVPAF

Query:  DEPYIKVPKVLNKD
        ++ Y+KVPK+LNK+
Subjt:  DEPYIKVPKVLNKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAAAGCTCTTCCTGTGCTCAAAGGAGCTTCATCATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAG
AATCCGAAAATGTTCAACTGCTTCAGGAATTATGGCCTCTCTTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAG
AATTGGCGCCTAAAATTGGACAAGTTTGGGCAGCTCCAGACAATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGC
GCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAAAGTTCTCAATAAGGACTAG
mRNA sequenceShow/hide mRNA sequence
GCTCGAGTGAATGACGCATTTGTTCCCTAAGCTGCCACAGTACAAATTTCTGTTCATTCGGATCGGTGGAGGAAGGAGAATCAAATCGTTTAGTTTAGCCAGAAAGAAAA
CATAATTCGATACTCTTAAAGCACAACCAATATACCAAAATATCGATCCTTCCCAACATCAATCCAAAATTAGACTAGAACAACGCATAAACTTGAAGAAATGAAAATTT
GAAAGATCATAATACTTCAATCTCACTTGTTTGAAGAGGAGAACGGGAAAAATCCAGACGAGGGAACGAAAGCTGCGAGCCTGAGGCGCTGAGAGACGACGGTGAGTATC
GACCGAGAGTGCTGACGCAGATACTGAAAATTAGGGCTCCGATGGTTGAAAATTTGAGATATAAAAATTAAATTAAAATTTTAAGTAATTTAATAAATAAAAAATATAAA
TTTGAAAATTCTAATATAAAATAACAAAAATTTGGCGATAGGCTCCATTTTCCGCCATTAACGATTGGAATGGGAAGCAAAGCTCTTCCTGTGCTCAAAGGAGCTTCATC
ATTTTCATCGTTAAAGCGGCGAATCTTCATCTCTAGCGGCTTGCATTCGCCATCTGTTTCTAACATCAGAATCCGAAAATGTTCAACTGCTTCAGGAATTATGGCCTCTC
TTCAACCTCCCGATGTCCTCCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCGGTGAGGTTGAAGAATTGGCGCCTAAAATTGGACAAGTTTGGGCAGCTCCAGAC
AATACTGGAGGTGTCAATCAGCGGAATGACGCTCCTGAAACATTTGAAAACAGAGAGGCCATGATTCGCGCAGTTCCAGCCTTTGATGAGCCGTATATCAAAGTTCCTAA
AGTTCTCAATAAGGACTAG
Protein sequenceShow/hide protein sequence
MGSKALPVLKGASSFSSLKRRIFISSGLHSPSVSNIRIRKCSTASGIMASLQPPDVLRLAETARISLTPGEVEELAPKIGQVWAAPDNTGGVNQRNDAPETFENREAMIR
AVPAFDEPYIKVPKVLNKD