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Carg03090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18a-like protein
Genome locationCarg_Chr09:3470609..3474345
RNA-Seq ExpressionCarg03090
SyntenyCarg03090
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]6.8e-6783.01Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]7.2e-6984.97Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPV FPQPTRPPG+SD DD SQ +HYAHGYQ V GYA+VEGRPVREP LPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAVIAT+AIIFGAT+ ADVW
Subjt:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

XP_022936871.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]8.5e-86100Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
Subjt:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]1.6e-8498.03Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQP++YAHGYQTVTGYA+VEGRPVREPRLPCCGIGYGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
Subjt:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]2.1e-8498.03Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQP+ YAHGYQTVTGYA+VEGRPVREPRLPCCGIGYGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
Subjt:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein3.3e-6783.01Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        F L A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein3.5e-6984.97Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPV FPQPTRPPG+SD DD SQ +HYAHGYQ V GYA+VEGRPVREP LPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAVIAT+AIIFGAT+ ADVW
Subjt:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein3.5e-6984.97Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPV FPQPTRPPG+SD DD SQ +HYAHGYQ V GYA+VEGRPVREP LPCCGIG GWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        F L A  WY GAILILCGRV YREKPGYVACSIAAVIAT+AIIFGAT+ ADVW
Subjt:  FILPA-TWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein4.1e-86100Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
Subjt:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein7.8e-8598.03Show/hide
Query:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG
        MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQP++YAHGYQTVTGYA+VEGRPVREPRLPCCGIGYGWFLFIIG
Subjt:  MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIG

Query:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
Subjt:  FILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein7.9e-2646.04Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL
        +YGTFQGVAN+    PP  F QP  P    PG    +        +YA G+  V   Y VVE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA +
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL

Query:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        +L   V +REK GYVACSIA+V+  +A++ G T   ++W
Subjt:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.3e-4155Show/hide
Query:  QEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGY-AVVEGRPVREPRLPCCGIGYGW
        +EDKS           E    H  YGTFQGV+NYPP        GFPQP+ PPGV D    S   +YAHGYQTV  +  V EGRPVR+ RLPCCGIG GW
Subjt:  QEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP-------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGY-AVVEGRPVREPRLPCCGIGYGW

Query:  FLFIIGFILPA-TWYIGAILILCG-RVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FLFI+GF L A  WY+G  +++ G R+ YREKPGY+AC+IAA++AT+A+I G +KGAD W
Subjt:  FLFIIGFILPA-TWYIGAILILCG-RVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

AT1G29970.1 60S ribosomal protein L18A-15.6e-2746.04Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL
        +YGTFQGVAN+    PP  F QP  P    PG    +        +YA G+  V   Y VVE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA +
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL

Query:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        +L   V +REK GYVACSIA+V+  +A++ G T   ++W
Subjt:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

AT1G29970.2 60S ribosomal protein L18A-13.8e-2349.17Show/hide
Query:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL
        +YGTFQGVAN+    PP  F QP  P    PG    +        +YA G+  V   Y VVE RP+ E  LPCCG+G GWFLFI+GF+     WY+GA +
Subjt:  HYGTFQGVANY----PPVGFPQPTRP----PG--VSDFDDRSQPEHYAHGYQTVT-GYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL

Query:  ILCGRVHYREKPGYVACSIA
        +L   V +REK GYVACSIA
Subjt:  ILCGRVHYREKPGYVACSIA

AT1G53560.1 Ribosomal protein L18ae family1.0e-3652.52Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL
        YGTFQGV  YPP            +G PQP+ PPG    D       Y   +QTV GY V +GRP R+ RLPCCG+G GWFLFIIGF+L A  WY+G  +
Subjt:  YGTFQGVANYPP------------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAIL

Query:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        ++C R+  REKPGYVAC+IAAV+AT+ I+FG   G  VW
Subjt:  ILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW

AT3G14595.1 Ribosomal protein L18ae family2.0e-2442.95Show/hide
Query:  EDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEG-RPVREPRLPCCGIGYGWFL
        +DK+ +  VV  H H+  P  P    FQGV+NYPP       G+PQP +P              YA GY       VV G RP    R  CCGIG GW L
Subjt:  EDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPP------VGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEG-RPVREPRLPCCGIGYGWFL

Query:  FIIGFILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW
        FI+GF     WYIG  L+L  R + RE+PGY+AC++ AV AT+ +IFG  +G+ VW
Subjt:  FIIGFILPATWYIGAILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTCGTTCACCACCATCACGAACCCAATCCCGGCCACCCTCACTACGGAACCTTTCAAGGCGTCGCTAACTATCC
TCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGATGATCGTTCTCAACCTGAGCACTATGCTCATGGCTATCAAACTGTCACTGGATATGCTG
TTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATTATTGGCTTCATCCTTCCTGCTACATGGTACATTGGG
GCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCGGGATATGTTGCTTGCTCAATTGCTGCGGTTATTGCCACAGTTGCAATAATTTTCGGTGCAACAAA
GGGAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
TTTCGCCTCGGGTTTTGTTTCTGAAGACGAGAGAAAATGAGCCAGGAAGATAAATCTGCCGCCGTCGGTGTCGTCGTTCACCACCATCACGAACCCAATCCCGGCCACCC
TCACTACGGAACCTTTCAAGGCGTCGCTAACTATCCTCCTGTCGGATTCCCCCAGCCTACTCGCCCGCCTGGTGTCTCCGACTTCGATGATCGTTCTCAACCTGAGCACT
ATGCTCATGGCTATCAAACTGTCACTGGATATGCTGTTGTCGAAGGAAGACCAGTGAGAGAGCCTCGCCTTCCTTGCTGTGGTATTGGCTATGGGTGGTTCCTGTTTATT
ATTGGCTTCATCCTTCCTGCTACATGGTACATTGGGGCAATTCTTATACTATGTGGCAGGGTGCACTATCGTGAGAAACCGGGATATGTTGCTTGCTCAATTGCTGCGGT
TATTGCCACAGTTGCAATAATTTTCGGTGCAACAAAGGGAGCTGATGTCTGGTAACCAATCCTAAACTAAAAATATTGTATAGTTTGCAAACATGTACGAACAACAAAAT
CCATGATCTTTGACCCCCACATCTTCAAGATAGTTCCATTGAAATCTGAATTTGTGAGAGCCTATAGATACTGCTTAGCGGTTGTTTCCCATGTCGTCGTGCCTAAGAAG
TGTAGAATTCTGCAAAATCACGTTATTTGATTTTTCTATGATATGTCCAAAGGTGTGTTATGACTATTCATCTGAAACTCCTCTGTCGGAATGTCCCTATCCTTCTGTAA
ATATATTTCTTCTTTGTTGTTTGGATATGCATTTGAGCTTCAAAACAGAAAACTGTTCTTCGCTGATCAGATTGTGTTGCTCAGCCTGATGATCTTCTAAGGTAAAAGAC
TTCGTTGCTTACACCTCTATGCAGGCAAGGTAGAAAGATCTATTTATTGATGTGCATCTATTTTTTTTAATTAACAGAAAACTTTACTTTGTTGGGTTTTATAAAAATTA
TTGTGTGAAAAAATTAAGCTCCTGTACTGATAAATTCTCTCTCTTCATAAATTATTTTCAAAATGTGTGTGAAACATTTTGAGATGAAGCATACCGAGGATCAATTTTTG
TAAATTTAAACTGCTTTAGTGTTTTTTTTTAGAGCACAACAATTGCAGAAATGATGAGTCAAACCTCCAATATGAAGGGCGAAAAAGCAGGTAAATTATTTTGGAGTTAA
ACTCACTTTGACAAAAT
Protein sequenceShow/hide protein sequence
MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPEHYAHGYQTVTGYAVVEGRPVREPRLPCCGIGYGWFLFIIGFILPATWYIG
AILILCGRVHYREKPGYVACSIAAVIATVAIIFGATKGADVW