; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03116 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03116
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal_L30 domain-containing protein
Genome locationCarg_Chr20:3042571..3043370
RNA-Seq ExpressionCarg03116
SyntenyCarg03116
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]1.7e-51100Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        SPSSASAS
Subjt:  SPSSASAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]3.8e-4892.59Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]4.8e-5199.07Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        SPSSASAS
Subjt:  SPSSASAS

XP_022986405.1 uncharacterized protein LOC111484152 [Cucurbita maxima]1.0e-4895.37Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]1.4e-5098.15Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein7.1e-4892.59Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

A0A1S3C214 50S ribosomal protein L301.9e-4892.59Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

A0A5A7VAZ6 50S ribosomal protein L301.9e-4892.59Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

A0A6J1FUA4 uncharacterized protein LOC1114488482.3e-5199.07Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        SPSSASAS
Subjt:  SPSSASAS

A0A6J1JDZ2 uncharacterized protein LOC1114841524.9e-4995.37Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLP
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        +PSSASAS
Subjt:  SPSSASAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L302.7e-0446.3Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

A8ZV75 50S ribosomal protein L302.7e-0443.86Show/hide
Query:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Subjt:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

C3PL27 50S ribosomal protein L302.1e-0442.59Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8FS51 50S ribosomal protein L301.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8NSX3 50S ribosomal protein L301.6e-0446.3Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein3.7e-3364.81Show/hide
Query:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR+VVVETEEMY ARK+    H ALRPPLVV+H  
Subjt:  MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLP

Query:  SPSSASAS
        SP++ S++
Subjt:  SPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTAC
ATTAGAGGCATTGCGGCTCCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
TTGAGGTGCTTAGCTGAGATTGTTGATATGCTCGCAGAGAAATCTATTTCTTGATCATTTTTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCC
TTCAAAGCCAATGTCCCAATTACATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGCGGCT
CCGAAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTC
GTAAACAGAAGGTGGAACAGCATGTGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCTTCTCCAAGTTCTGCTTCTGCCTCTTGAAACATGCATTGCTGTTAGATA
TCAGGTCTACTTCTCATTTATCGGGACGATGTGAGAAGGATTATATTTGAGCAGTGTACTTTTCTGGAATTATTTGATAATCAAGGCTTTTATACTCTATACATCTTGCT
GAGTCTAGTTGCTAGCTAAAATAATTTATTGGAATAGATGCCTGTTTGAAAATGATGCCTATCAAAATCATTTGAGGATTCTACTTTCAGTAAGAAGCCTGCTATGAGAC
ATGGATGTTTACATAAATGAGTGCCGGTT
Protein sequenceShow/hide protein sequence
MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS