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Carg03127 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03127
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA repair protein RAD16
Genome locationCarg_Chr20:2974534..2975658
RNA-Seq ExpressionCarg03127
SyntenyCarg03127
Gene Ontology termsGO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570890.1 hypothetical protein SDJN03_29805, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0994.74Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADG+ASD+IDVSSLYSDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
KAG7010738.1 hypothetical protein SDJN02_27534 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-24100Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESEVKRTLSSNNLFNNILLFTLPLPTMP
        MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESEVKRTLSSNNLFNNILLFTLPLPTMP
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESEVKRTLSSNNLFNNILLFTLPLPTMP
XP_022943925.1 DNA repair protein RAD16 [Cucurbita moschata]1.9e-10100Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
XP_023512492.1 DNA repair protein RAD16 isoform X1 [Cucurbita pepo subsp. pepo]4.1e-1097.37Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADGDASD+IDVSSLYSDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
XP_023512494.1 DNA repair protein RAD16 isoform X2 [Cucurbita pepo subsp. pepo]4.1e-1097.37Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADGDASD+IDVSSLYSDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
TrEMBL top hitse value%identityAlignment
A0A0A0LN53 Uncharacterized protein1.6e-0474.36Show/hide
Query:  MKLRPRKPTSNILI-QGNADGDASDEIDVSSLYSDSESE
        MKLRPRKP SN+LI +GN DGD SD+IDVSSL SD  SE
Subjt:  MKLRPRKPTSNILI-QGNADGDASDEIDVSSLYSDSESE
A0A6J1FYD3 DNA repair protein RAD169.0e-11100Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
A0A6J1J723 DNA repair protein RAD165.8e-1094.74Show/hide
Query:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
        MKLRPRKPTSNILIQGNADGDASD+IDVSSL+SDSESE
Subjt:  MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTCGTCCTCGTAAACCGACCTCCAATATTTTGATCCAAGGAAACGCAGATGGTGATGCTTCTGATGAAATTGACGTGTCGTCTCTTTATTCTGACAGTGAAAG
TGAAGTTAAGCGAACTCTTTCCTCTAACAATCTCTTCAATAATATACTTTTGTTCACGTTACCATTGCCTACAATGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATAACCACCCCCTTTCCCGCCGATCATATCACAGTCATTCAACTTCAACGCATCACTCATTCCCCATTTTTATTTTGTTCTCCGTACTTTGCTTTCGCTGCAGGTCGTTT
TTTCACTGCAAAGCTGCGCTGCCGCTTCTACGCCTACTTCTTCTTCTTCTTCTTCGTCTTCTTCCGGCTGATCAAGCGTGCGTCATCCTCCGAACCGGAGAATAGAAGAG
AAGAGAATCGCAGCGTTTCGTGGTTCCGATGAAGCTTCGTCCTCGTAAACCGACCTCCAATATTTTGATCCAAGGAAACGCAGATGGTGATGCTTCTGATGAAATTGACG
TGTCGTCTCTTTATTCTGACAGTGAAAGTGAAGTTAAGCGAACTCTTTCCTCTAACAATCTCTTCAATAATATACTTTTGTTCACGTTACCATTGCCTACAATGCCTTAG
Protein sequenceShow/hide protein sequence
MKLRPRKPTSNILIQGNADGDASDEIDVSSLYSDSESEVKRTLSSNNLFNNILLFTLPLPTMP