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Carg03134 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03134
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhigh mobility group B protein 3-like
Genome locationCarg_Chr20:2929859..2930883
RNA-Seq ExpressionCarg03134
SyntenyCarg03134
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570882.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]1.5e-41100Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSE
        MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSE
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSE

KAG7010731.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-47100Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQE
        MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQE
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQE

Query:  ASSSS
        ASSSS
Subjt:  ASSSS

XP_022140698.1 high mobility group B protein 3-like [Momordica charantia]6.2e-3569.7Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAGGEKWKSLSDA                           NCC
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
          A+AE  MPTESQKSTSEVHDD +QEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

XP_023533147.1 high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]1.1e-3468.18Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAGGEKWKS+SDA                           NC 
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
        + AEAE+EM TESQKSTS+V DDAEQEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]1.2e-3568.18Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLKQ+K+EMKSTK  K  KKDQNAPKRPAT FF+FMEEFRKTFKE+FPD KAGP VGKAGGEKWKS+SD                            NCC
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
        + AEAEIEMPTESQKSTSEVHDDAEQEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C2L9 high mobility group B protein 1-like isoform X25.5e-2962.6Show/hide
Query:  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCCS
        LKQ+K+EMKST   K  KKDQNAPKRPAT FF+FMEEFR  FKE+FPD KAGP VGKAGGEKWKS+SDA                           NC +
Subjt:  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCCS

Query:  GAEAEIEMPTESQKSTSEVHDDAEQEASSSS
         AE E+EMPTESQKSTSEV+DD EQEASSSS
Subjt:  GAEAEIEMPTESQKSTSEVHDDAEQEASSSS

A0A6J1CIL2 high mobility group B protein 3-like3.0e-3569.7Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLKQ+K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAGGEKWKSLSDA                           NCC
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
          A+AE  MPTESQKSTSEVHDD +QEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

A0A6J1FWU6 high mobility group B protein 3-like1.1e-2993.51Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAE
        MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA     AE
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAE

A0A6J1G5W3 high mobility group B protein 3-like1.5e-3467.42Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAGGEKWKS+SDA                           NC 
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
        + AEAE+EM TESQKSTS+V DD EQEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

A0A6J1I4V5 high mobility group B protein 3-like2.5e-3467.42Show/hide
Query:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC
        MLK++K+EMKSTK NK MKKDQNAPKRPAT FFIFMEEFRKTFKEKFPD KAGPAVGKAGGEKWKS+SDA                           NC 
Subjt:  MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA---------------------------NCC

Query:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS
          AEAE+E+ TESQKSTS+V DDAEQEASSSS
Subjt:  SGAEAEIEMPTESQKSTSEVHDDAEQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 12.5e-1040Show/hide
Query:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS
        +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKS+S A      E   +   E +K     + + E+ +  S
Subjt:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS

O49596 High mobility group B protein 23.2e-1038.21Show/hide
Query:  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM---------------
        L   K   K     K   KD N PKRPA+ FF+FME+FR+TFK++ P  K+   VGKA G+KWKSLSD+          + ++E                
Subjt:  LKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM---------------

Query:  --PTESQKSTSEVHDDAEQEASS
            ES KS SEV+D+ + E  S
Subjt:  --PTESQKSTSEVHDDAEQEASS

P26585 HMG1/2-like protein7.6e-1242.99Show/hide
Query:  KDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA------------------NCCSGAEAEIEMPT-----ESQKSTSEVHDD
        KD N PKRP + FF+FMEEFRK F ++ P+ KA  AVGKA G KWK++SDA                  N  +  + + E PT     ES+KS SEV+D+
Subjt:  KDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA------------------NCCSGAEAEIEMPT-----ESQKSTSEVHDD

Query:  AEQEASS
         + E  S
Subjt:  AEQEASS

P40619 HMG1/2-like protein5.8e-1242.86Show/hide
Query:  KSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN---CCSGAE------------------AEIEMPT
        K +   TK  K   KD N PKRP + FF+FME+FRKT+KEK P+ K+   VGKAGG+KWK L+ A      S AE                  A      
Subjt:  KSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN---CCSGAE------------------AEIEMPT

Query:  ESQKSTSEVHDDAEQEASS
        ES KS SEV+DD E +  S
Subjt:  ESQKSTSEVHDDAEQEASS

P93047 High mobility group B protein 36.9e-1340Show/hide
Query:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------
        + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+          + ++E         
Subjt:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------

Query:  ---------PTESQKSTSEVHDDAEQEASS
                   ES KS SEV+D+ + E  S
Subjt:  ---------PTESQKSTSEVHDDAEQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B34.9e-1440Show/hide
Query:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------
        + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+          + ++E         
Subjt:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------

Query:  ---------PTESQKSTSEVHDDAEQEASS
                   ES KS SEV+D+ + E  S
Subjt:  ---------PTESQKSTSEVHDDAEQEASS

AT1G20696.2 high mobility group B32.6e-1553.95Show/hide
Query:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA
        + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+
Subjt:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDA

AT1G20696.3 high mobility group B34.9e-1440Show/hide
Query:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------
        + K+E +STK++         KG  KD N PKRP++ FF+FME+FR T+KE+ P  K+  AVGKAGGEKWKSLSD+          + ++E         
Subjt:  QKKSEMKSTKIN---------KGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDAN----CCSGAEAEIEM--------

Query:  ---------PTESQKSTSEVHDDAEQEASS
                   ES KS SEV+D+ + E  S
Subjt:  ---------PTESQKSTSEVHDDAEQEASS

AT3G51880.1 high mobility group B11.7e-1140Show/hide
Query:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS
        +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKS+S A      E   +   E +K     + + E+ +  S
Subjt:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS

AT3G51880.2 high mobility group B11.7e-1140Show/hide
Query:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS
        +K   + T+  K  KKD N PKR  + FF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKS+S A      E   +   E +K     + + E+ +  S
Subjt:  KKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGA
GGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTT
CGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCAGAAAAAATCTGAGATGAAATCCACGAAAATCAACAAAGGAATGAAGAAAGATCAAAATGCTCCAAAACGTCCGGCTACAGTCTTCTTCATTTTCATGGA
GGAATTCAGGAAGACGTTCAAGGAGAAGTTTCCTGATGGAAAAGCTGGTCCAGCAGTTGGCAAAGCTGGCGGTGAGAAATGGAAGTCACTTTCTGATGCTAATTGCTGTT
CGGGCGCTGAAGCTGAAATTGAAATGCCAACAGAATCGCAGAAATCAACCTCTGAGGTCCATGATGACGCAGAGCAGGAAGCTAGCTCCAGCTCTTAG
Protein sequenceShow/hide protein sequence
MLKQKKSEMKSTKINKGMKKDQNAPKRPATVFFIFMEEFRKTFKEKFPDGKAGPAVGKAGGEKWKSLSDANCCSGAEAEIEMPTESQKSTSEVHDDAEQEASSSS