CuGenDBv2

Gene ID	Carg03196
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cyclin-dependent kinases regulatory subunit
Genome location	Carg_Chr20:2605637..2607208
RNA-Seq Expression	Carg03196
Synteny	Carg03196
Gene Ontology terms	GO:0007346 - regulation of mitotic cell cycle (biological process) GO:0045737 - positive regulation of cyclin-dependent protein serine/threonine kinase activity (biological process) GO:0051301 - cell division (biological process) GO:0000307 - cyclin-dependent protein kinase holoenzyme complex (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0019901 - protein kinase binding (molecular function) GO:0042393 - histone binding (molecular function) GO:0043130 - ubiquitin binding (molecular function) GO:0061575 - cyclin-dependent protein serine/threonine kinase activator activity (molecular function)
InterPro domains	IPR000789 - Cyclin-dependent kinase, regulatory subunit IPR036858 - Cyclin-dependent kinase, regulatory subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8711387.1 Cyclin-dependent kinases regulatory subunit 1 [Hibiscus syriacus]

5.8e-41

84.54

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACI
        MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQENLAQQ      PL R  C+
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACI

KAG7010670.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-56

100

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACISEL
        MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACISEL
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACISEL

Query:  VEDQTP
        VEDQTP
Subjt:  VEDQTP

XP_022944260.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata]

5.3e-42

100

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

XP_022986411.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima]

5.3e-42

100

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

XP_038902899.1 cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida]

1.3e-40

96.43

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

TrEMBL top hits

e value

%identity

Alignment

A0A6A3B6N5 Cyclin-dependent kinases regulatory subunit

2.8e-41

84.54

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACI
        MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQENLAQQ      PL R  C+
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACI

A0A6J1FYK0 Cyclin-dependent kinases regulatory subunit

2.6e-42

100

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

A0A6J1H322 Cyclin-dependent kinases regulatory subunit

8.2e-41

96.43

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

A0A6J1JB14 Cyclin-dependent kinases regulatory subunit

2.6e-42

100

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

A0A6J1K8L9 Cyclin-dependent kinases regulatory subunit

8.2e-41

96.43

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
        MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQN

SwissProt top hits

e value

%identity

Alignment

A2XCH8 Cyclin-dependent kinases regulatory subunit 1

3.3e-39

91.36

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLA
        MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQE  A
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLA

O23249 Cyclin-dependent kinases regulatory subunit 1

1.3e-40

92.68

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQ
        MGQIQYSEKYFDD  EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQEN AQ
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQ

P55933 Probable cyclin-dependent kinases regulatory subunit

1.2e-28

83.33

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Query:  IQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRR
        IQYSEKY+DD  EYRHV+LPPDVAK +PKNRLLSE EWR LGVQQS+GWVHYA+HRPEPHI+LFRR
Subjt:  IQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRR

Q6PS57 Cyclin-dependent kinases regulatory subunit 1

3.3e-39

91.36

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLA
        MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQE  A
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLA

Q9SJJ5 Cyclin-dependent kinases regulatory subunit 2

9.0e-37

87.18

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE
        MGQIQYS+KYFDD  EYRHVVLPP+VAKLLPKNR+LSE+EWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ +
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE

Arabidopsis top hits

e value

%identity

Alignment

AT2G27960.1 cyclin-dependent kinase-subunit 1

9.6e-42

92.68

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQ
        MGQIQYSEKYFDD  EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQEN AQ
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQ

AT2G27970.1 CDK-subunit 2

6.4e-38

87.18

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Query:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE
        MGQIQYS+KYFDD  EYRHVVLPP+VAKLLPKNR+LSE+EWRA+GVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ +
Subjt:  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE

Sequences

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CDS sequence

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ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTTTC
TGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACC
AACAGCAGCAGGAGAACCTCGCTCAACAAAACGCTTGGGAATTTGTACCACTTCAGCGAACTGCTTGCATATCAGAACTTGTGGAGGATCAGACCCCATGA

mRNA sequence

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TTTTCGGGGGGTTGCGGAGGAGAGCCCTAGCTCAGTTTGAGTTTGCTGTTCAGACATCGTTTCAGTTGGGCGATCGGAACCATTGAATGAATTAGCTTCATCTTCATCGT
ATTGTAATTGTCTCTGGAAGGTGAAGATTAAAGCACTGACGGATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCC
ACCCGACGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTTTCTGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTC
CCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGCTTGGGAATTTGTACCACTTCAGCGAACTGCTTGC
ATATCAGAACTTGTGGAGGATCAGACCCCATGA

Protein sequence

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MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNAWEFVPLQRTACISELVEDQTP

Carg03196 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome