CuGenDBv2

Gene ID	Carg03211
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Rep_fac-A_C domain-containing protein
Genome location	Carg_Chr20:2549265..2551940
RNA-Seq Expression	Carg03211
Synteny	Carg03211
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

4.0e-101

100

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

XP_022985578.1 uncharacterized protein LOC111483608 isoform X1 [Cucurbita maxima]

1.6e-97

95.85

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPF      AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

XP_022985581.1 uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]

1.7e-99

98.93

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

XP_023512876.1 uncharacterized protein LOC111777484 isoform X1 [Cucurbita pepo subsp. pepo]

7.0e-98

95.85

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP SSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPF      AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

7.5e-100

98.93

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNP SSSSKRVFR+LMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

1.9e-101

100

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

9.9e-98

100

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

8.1e-100

98.93

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPFAAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

A0A6J1JBQ0 uncharacterized protein LOC111483608 isoform X2

3.9e-94

95.7

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD
        HPF      AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCD
Subjt:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCD

A0A6J1JE09 uncharacterized protein LOC111483608 isoform X1

7.6e-98

95.85

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKL

Query:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT
        HPF      AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGL KVSSAVGNGQNMHSSKKQKRCDVGTSKTT
Subjt:  HPF------AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

9.0e-43

52.94

Show/hide

Query:  TTMCAVIAMDHTSFCYRVCSICERTLPSN----PPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF
        T +C ++A+D T +CYRVCS C+R LPS+       S CKFC        S   K ++RILMSIATD  V+TVICFDR A VLFGCSADEFF F KL+P 
Subjt:  TTMCAVIAMDHTSFCYRVCSICERTLPSN----PPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPF

Query:  AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSS
        AA  V+++ +GEM RMT+++P+N NAQH RV  +VPL SG QPAI+ LR++   TK +S        HSS
Subjt:  AAEAVSEILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSS

Sequences

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CDS sequence

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mRNA sequence

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ATGGAAAACGATAAGCCAATAACAACAATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGCTACAGAGTTTGTTCAATCTGTGAGAGGACACTCCCTAGTAACCC
TCCTTTTTCTCTATGCAAATTCTGCAACTTCAACGCTTTCAATCCCGGTTCCTCCTCCTCCAAGCGTGTCTTTCGTATACTTATGTCAATTGCTACGGATAAGAAAGTAC
AAACTGTTATATGCTTTGATAGGGTTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCCTTTGCTGCTGAAGCTGTAAGTGAA
ATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCAAAGAATGGCAATGCACAACACTCGAGAGTTGTGCAACTTGTTCCTCTGAGTTCAGGTTTTCAACCAGC
AATTCTGAGATTGAGGGAATTGTATGGGCTAACAAAGGTATCATCTGCTGTTGGTAATGGACAAAACATGCATAGCTCCAAGAAGCAAAAGAGATGTGATGTGGGCACCT
CAAAAACTACCTAATCCTATCCCTTTCTTCAACTGTTTGTATTTTTGCTATCATTTAGACTTTGTTATTTGATATGACTTTTTTGTGCAGTGGAGAGGATTTTAACTAGA
AAGGAAGAATGAAGTAGATTCTATTTCTTTCCTTTGGGACATGACACATGACAAGATAGCTTTCTTGGGAATGGAACAGTTGGATCGTTGTTCAATAGTAGCCGGGATAA
GCAGGCATAAACTTCTGTATAGCGCCCTATAAATACGACTTGCCTTGCAACATACCTGCTGAACAAGGCTATAAAAGGCAACTCCTGTAAGTATATATCAATCACCACTA
AGTTATACTCATGTTTGATGCAAGTTTAGGTTCGAAACTCTAGCATTATGAGAAGAAAGCGGTGTTCGAGTTATAGTTTTGATGGATGCATATC

Protein sequence

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MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPSNPPFSLCKFCNFNAFNPGSSSSKRVFRILMSIATDKKVQTVICFDRVARVLFGCSADEFFDFAKLHPFAAEAVSE
ILEGEMFRMTISKPKNGNAQHSRVVQLVPLSSGFQPAILRLRELYGLTKVSSAVGNGQNMHSSKKQKRCDVGTSKTT

Carg03211 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome