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Carg03215 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03215
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18
Genome locationCarg_Chr20:2540498..2540884
RNA-Seq ExpressionCarg03215
SyntenyCarg03215
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]1.9e-62100Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVNSLKNNGVKLILDNNDDDASRPSYE
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]9.4e-6299.22Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVNSLKNNGVKLILDNNDDDA RPSYE
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]2.5e-6299.22Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMD+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVNSLKNNGVKLILDNNDDDASRPSYE
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

XP_031267328.1 uncharacterized protein LOC116125753 [Pistacia vera]4.1e-5790.55Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIK SLECGRSCNAKAA VVGEVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSY
        AIVN+LKNNGVKL+LD++DDDASRPS+
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSY

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.3e-5894.53Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVN+LKNNGVKLILDNN DDASR SY+
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

TrEMBL top hitse value%identityAlignment
A0A2N9ELK5 Uncharacterized protein5.8e-5790.48Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLF+S+KYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPS
        AIVN+LKNNGVKLILD+NDD+ S+PS
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPS

A0A5C7GTN9 Uncharacterized protein4.4e-5789.76Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIV TASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKV+GLEQGQGRGIH+D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSY
        AIVNSLKNNG+KL+L++NDD+ SRPSY
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSY

A0A6J1FXG0 uncharacterized protein LOC1114484609.2e-63100Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVNSLKNNGVKLILDNNDDDASRPSYE
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

A0A6J1JBQ5 uncharacterized protein LOC1114836104.6e-6299.22Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSYE
        AIVNSLKNNGVKLILDNNDDDA RPSYE
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSYE

A0A6P3ZI60 uncharacterized protein LOC1074114743.4e-5790.55Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVGEVLAMRLKV+GLEQGQGRGIH+D+NKE+EKKGFKNRTKIW
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDDASRPSY
        AIVNSLKNNGVKLILD+ND+++SRPSY
Subjt:  AIVNSLKNNGVKLILDNNDDDASRPSY

SwissProt top hitse value%identityAlignment
A1KRI9 50S ribosomal protein L181.4e-0428.7Show/hide
Query:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV
        LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

A9M3V0 50S ribosomal protein L181.4e-0428.7Show/hide
Query:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV
        LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L181.4e-0428.7Show/hide
Query:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV
        LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q7DDT0 50S ribosomal protein L181.4e-0428.7Show/hide
Query:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV
        LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L181.4e-0428.7Show/hide
Query:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV
        LK   + +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein2.9e-5381.82Show/hide
Query:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW
        MTVLKRYV+RLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIH D+ KEIEKKGFK+RTK+W
Subjt:  MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDNNDDD
        A++NSL+NNGV LILD++DDD
Subjt:  AIVNSLKNNGVKLILDNNDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGT
TGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAAC
AGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAATCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGT
GTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTATTAAAGCGCTACGTGGTACGATTATTCATATCTTTAAAGTATATAACCGCAAATGTGGTAGATAGAAACAATGGACGGATTGTCGCAACTGCATCCACAGT
TGAACACTCCATCAAGGGTTCACTTGAATGTGGGCGGTCTTGTAATGCTAAGGCAGCAGCAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGAAC
AGGGGCAAGGAAGAGGGATTCACATGGACATAAACAAGGAAATCGAAAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTCAACTCACTCAAGAACAACGGT
GTTAAACTTATTCTCGACAACAATGACGATGATGCATCTCGGCCAAGTTATGAGTAA
Protein sequenceShow/hide protein sequence
MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNG
VKLILDNNDDDASRPSYE