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Carg03216 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03216
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionABC transporter F family member 1
Genome locationCarg_Chr20:2538600..2539492
RNA-Seq ExpressionCarg03216
SyntenyCarg03216
Gene Ontology termsGO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035231.1 ABC transporter F family member 1 [Cucumis melo var. makuwa]9.5e-3276.86Show/hide
Query:  QSQNKSAVGDEDR------FLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQ
        +  NKSAV DE+R       LPLL RSVG+    +FF++  RL MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK  AAAA SQNGVDKLANGVDALQ
Subjt:  QSQNKSAVGDEDR------FLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQ

Query:  LSDRTCTGVLCSHPLSRDIRV
        LSDRTCTGVLCSHPLSRDIR+
Subjt:  LSDRTCTGVLCSHPLSRDIRV

KAG6570809.1 ABC transporter F family member 1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5996.4Show/hide
Query:  MEDRKTRINKTRDAPEGKKLGEDRDQ-SQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAA
        MEDRKTRINKTRDAPEGKKLGED DQ  +NKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAA
Subjt:  MEDRKTRINKTRDAPEGKKLGEDRDQ-SQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAA

Query:  ANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        ANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  ANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

KAG6606039.1 ABC transporter F family member 1, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2870.63Show/hide
Query:  PEGKKLGEDRDQSQN-KSAVGDEDRFLPLLARSVGVTFAWLFFINF-PRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANG
        P+ K+    R  S + +SA     R   LLARS+ + F  +FF++  P LRMVSDASKKKAAQKKAAAAAKRGGK AAAAASSKAA+A+SQNGVDKLANG
Subjt:  PEGKKLGEDRDQSQN-KSAVGDEDRFLPLLARSVGVTFAWLFFINF-PRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANG

Query:  VDALQLSDRTCTGVLCSHPLSRDIRV
        VDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  VDALQLSDRTCTGVLCSHPLSRDIRV

KAG7010650.1 ABC transporter F family member 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-74100Show/hide
Query:  MEDRKTRINKTRDAPEGKKLGEDRDQSQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAA
        MEDRKTRINKTRDAPEGKKLGEDRDQSQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAA
Subjt:  MEDRKTRINKTRDAPEGKKLGEDRDQSQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAA

Query:  NSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRVSPNFILESNSCKSIECFF
        NSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRVSPNFILESNSCKSIECFF
Subjt:  NSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRVSPNFILESNSCKSIECFF

XP_023512784.1 ABC transporter F family member 1 [Cucurbita pepo subsp. pepo]4.6e-2698.67Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN0 Uncharacterized protein1.2e-3277.24Show/hide
Query:  RDQSQNKSAVGDEDRF------LPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDA
        R +  NKSAV DE+RF      LPLL RSVG+    +FF +  RL MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK  AAAA SQNGVDKLANGVDA
Subjt:  RDQSQNKSAVGDEDRF------LPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDA

Query:  LQLSDRTCTGVLCSHPLSRDIRV
        LQLSDRTCTGVLCSHPLSRDIR+
Subjt:  LQLSDRTCTGVLCSHPLSRDIRV

A0A1S3CNP6 ABC transporter F family member 13.5e-2494.81Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK  AAAA SQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

A0A5A7T0W7 ABC transporter F family member 14.6e-3276.86Show/hide
Query:  QSQNKSAVGDEDR------FLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQ
        +  NKSAV DE+R       LPLL RSVG+    +FF++  RL MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK  AAAA SQNGVDKLANGVDALQ
Subjt:  QSQNKSAVGDEDR------FLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSK--AAAANSQNGVDKLANGVDALQ

Query:  LSDRTCTGVLCSHPLSRDIRV
        LSDRTCTGVLCSHPLSRDIR+
Subjt:  LSDRTCTGVLCSHPLSRDIRV

A0A6J1FSU3 ABC transporter F family member 12.2e-2698.67Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

A0A6J1JDM5 ABC transporter F family member 15.4e-2597.37Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGK-AAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGK AAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGK-AAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

SwissProt top hitse value%identityAlignment
Q9FJH6 ABC transporter F family member 11.3e-2080Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGKAAA + S    AA S NGVD L++GVDALQ+SDRTCTGVLCSHP SRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV

Arabidopsis top hitse value%identityAlignment
AT5G60790.1 ABC transporter family protein9.5e-2280Show/hide
Query:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV
        MVSDASKKKAAQKKAAAAAKRGGKAAA + S    AA S NGVD L++GVDALQ+SDRTCTGVLCSHP SRDIR+
Subjt:  MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLANGVDALQLSDRTCTGVLCSHPLSRDIRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATCGGAAGACGAGAATCAACAAAACCAGAGATGCTCCAGAAGGGAAGAAATTGGGAGAAGACCGTGATCAATCGCAGAACAAAAGCGCCGTGGGAGACGAAGA
CCGATTTCTTCCTCTTCTCGCTCGCTCTGTCGGTGTCACTTTTGCGTGGTTGTTCTTTATCAATTTCCCCAGGTTAAGGATGGTTTCCGACGCGAGCAAGAAGAAAGCTG
CTCAGAAGAAGGCGGCTGCGGCGGCCAAGCGTGGAGGAAAAGCAGCGGCGGCTGCCGCTTCTTCCAAGGCTGCAGCGGCCAATTCGCAGAATGGAGTTGATAAGTTGGCT
AATGGAGTGGACGCTCTTCAATTATCTGATCGGACTTGTACTGGTGTGCTTTGCTCACATCCTCTCTCCAGAGACATCCGAGTAAGCCCTAATTTTATTCTAGAATCAAA
TTCTTGTAAATCTATTGAGTGCTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATCGGAAGACGAGAATCAACAAAACCAGAGATGCTCCAGAAGGGAAGAAATTGGGAGAAGACCGTGATCAATCGCAGAACAAAAGCGCCGTGGGAGACGAAGA
CCGATTTCTTCCTCTTCTCGCTCGCTCTGTCGGTGTCACTTTTGCGTGGTTGTTCTTTATCAATTTCCCCAGGTTAAGGATGGTTTCCGACGCGAGCAAGAAGAAAGCTG
CTCAGAAGAAGGCGGCTGCGGCGGCCAAGCGTGGAGGAAAAGCAGCGGCGGCTGCCGCTTCTTCCAAGGCTGCAGCGGCCAATTCGCAGAATGGAGTTGATAAGTTGGCT
AATGGAGTGGACGCTCTTCAATTATCTGATCGGACTTGTACTGGTGTGCTTTGCTCACATCCTCTCTCCAGAGACATCCGAGTAAGCCCTAATTTTATTCTAGAATCAAA
TTCTTGTAAATCTATTGAGTGCTTCTTTTAA
Protein sequenceShow/hide protein sequence
MEDRKTRINKTRDAPEGKKLGEDRDQSQNKSAVGDEDRFLPLLARSVGVTFAWLFFINFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAAANSQNGVDKLA
NGVDALQLSDRTCTGVLCSHPLSRDIRVSPNFILESNSCKSIECFF