; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03228 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03228
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex component RRP41-like
Genome locationCarg_Chr20:2464925..2469264
RNA-Seq ExpressionCarg03228
SyntenyCarg03228
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.1e-13798.84Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDPALEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

KAG7010638.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma]5.0e-139100Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGSLMI
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGSLMI
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGSLMI

Query:  TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]1.4e-13698.06Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDPALEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]4.7e-13798.45Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDPALEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]5.2e-13698.06Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATSTYSPSPTT KTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein3.0e-12991.86Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLID  LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESA T+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

A0A1S3CKF3 exosome complex component RRP41-like7.1e-13193.44Show/hide
Query:  MAKKATP-ATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-ATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDG
        TFSTPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDP LEEENYQDG
Subjt:  TFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

A0A6J1CHT0 exosome complex component RRP41-like7.1e-13193.8Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDP LEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

A0A6J1FYV1 exosome complex component RRP41-like6.6e-13798.06Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDPALEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

A0A6J1JDA9 exosome complex component RRP41-like2.3e-13798.45Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS   SCFGKNLLIDPALEEENYQDGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like2.5e-10171.98Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +   SC GK+L+IDP  EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL  IMR CLK+SA+   E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSE

B6YSI2 Exosome complex component Rrp411.4e-2733.2Show/hide
Query:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +D+F  VL++        I+ ASLALADAGI + DLVA+   GK    +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
         G  +  +  E ++L +  +  +    R  LKE    ++EE
Subjt:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

O59223 Exosome complex component Rrp418.3e-2833.61Show/hide
Query:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+   GK    +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
         G  +  +  E ++L +  +  +    R  LKE    +++E
Subjt:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

Q6P0I8 Exosome complex component MTR32.0e-2937.5Show/hide
Query:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF
        RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QGSE ++ S+ L ++L   + L  +P++ +DV 
Subjt:  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVF

Query:  ALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCF---GKNLLIDPALEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWSTAKINEGMQL
         +VLE+ GS L   ++CAS+ALADAGI +YD+V        G   L+DP+  E      E Y D  G + +  +P+  +V+ L   GE     + E M+ 
Subjt:  ALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCF---GKNLLIDPALEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWSTAKINEGMQL

Query:  CLDASCKLVTIMRSCL
        C+D   KL  +++  L
Subjt:  CLDASCKLVTIMRSCL

Q8U0L9 Exosome complex component Rrp411.4e-2733.61Show/hide
Query:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+   GK    +++D   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGK---NLLIDPALEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE
         G  +  +  E ++L +  +  +    R  LKE    +++E
Subjt:  TGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein3.8e-1231.48Show/hide
Query:  RPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR+ +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS--SCFGKN--LLIDPALEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  +   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS--SCFGKN--LLIDPALEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein3.8e-1231.48Show/hide
Query:  RPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR+ +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS--SCFGKN--LLIDPALEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  +   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS--SCFGKN--LLIDPALEEE

AT3G61620.1 3'-5'-exoribonuclease family protein8.5e-2036.69Show/hide
Query:  VRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGS
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL A SC    L   P L+    +D +
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGS

AT3G61620.2 3'-5'-exoribonuclease family protein8.5e-2036.69Show/hide
Query:  VRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  I+
Subjt:  VRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGS
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL A SC    L   P L+    +D +
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGS

AT4G27490.1 3'-5'-exoribonuclease family protein1.8e-10271.98Show/hide
Query:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS
        F++P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +   SC GK+L+IDP  EEE  +DGS
Subjt:  FSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVAS---SCFGKNLLIDPALEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSE
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL  IMR CLK+SA+   E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCAGCTACGTCTACGTATTCTCCGTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGATGTCGACTGGGTTCGCCCTGA
TGGCCGAAGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACGAAGGTCATTGTTTCTG
TATTCGGCCCTAGAGAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCG
GAAAACAAGGAGTTCTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGG
AGGCAGCGATCTTCCTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAAGCTGCTTTGGTAAGAATCTTCTTA
TTGATCCTGCATTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACTGGCGAATGGTCAACC
GCTAAAATTAATGAGGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAGGACAAAAAGCTTTGCAACCAAAATAGAACTGGTCTCGCGCCTCATTCGCTTCATAGGTTCAGTTTCTCAATGTTTGGTGCCTCGGCCTCCTCCACACACACA
GACTCTTTTCACTCTCTTTGAATAGACCGATCGATCCTGGGAAATTTGTGGCGGAACCTTCAAACTTATCGACGGAGGGAGTCATTGGCGTTCTGAATGGCCAAAAAAGC
GACACCAGCTACGTCTACGTATTCTCCGTCTCCTACCACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGATGTCGACTGGGTTCGCCCTGATGGCCGAAGCTTCC
ACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGGAACACGAAGGTCATTGTTTCTGTATTCGGCCCTAGA
GAAAGTAAGAAAGCAATGATGTATAGTGATATTGGCCGGCTCAATTGTAGCGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTT
CTCCTCAATGCTACATAAAGCTTTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACCACTGTGGATGTATTTGCCTTAGTGTTGGAATCTGGAGGCAGCGATCTTC
CTGTTGTAATATCATGTGCTAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAAGCTGCTTTGGTAAGAATCTTCTTATTGATCCTGCATTG
GAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACTATTACTGGCGAATGGTCAACCGCTAAAATTAATGA
GGGTATGCAGCTTTGTCTTGATGCTTCGTGTAAGCTTGTGACGATCATGCGGTCATGCTTGAAGGAATCTGCCGCCACGGTTTCAGAGGAATAAAACAGGTCTCTTTTAG
TTCGGTAGACAAGTCCCGACACCTCCCCTCCACCCCCAATTTTGATGACAAAGAAAAGCATGTAGTATCTTTGGATAGTGGTTGATTTGGATTTTTCAGTAAGTAAAAAT
AGCCATTTTTTTCAAGGGAAAGACGAAAAAAATAGGAGAGAAGTTTTCATTTGCGTAGTTGACTTGTAATAGTGGGTTGGTAGCCATAGCAAAACAAGCAAGGTTGACTT
GAAACTACTTGTTCAATGCTCTGGTTTTTGTGATATGTCGTTTTTTCGCCCACTGAGTGATTGCTTAGGGACCTTAACGCACAATTTGGGCGGTTTCCCTCTTGTCTTTG
CGTCTTAACAATGATATCCTTTTTAGGTAAGATGAGATTTGATATAGGCAATGGTCACTGAACTTGCTGCATGCTACTAGTGGATAACGAAACAAAGAAATCTGTTGCTG
AAAGAAGTGTTTATAAGTTTGATTGTCAATAAATGAAGCGTTTATCATTCGGGTACGATCAATTCCTGACCTCGAGCATGCATGCTGAACTCTGAGGCCAATCTATGCCG
TCCAATGTGAGTTCAATCTTATGCATATGACTAAAAATTAGAACCGCGATGCCAGGTTTGAGCAACTGCAAAGAAATAGTATGAATCCAATCCATTATACACAGTCTTTG
GAAATGATTTTGG
Protein sequenceShow/hide protein sequence
MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASSCFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWST
AKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE