; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03247 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03247
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationCarg_Chr20:2358737..2359530
RNA-Seq ExpressionCarg03247
SyntenyCarg03247
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570773.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7280.4Show/hide
Query:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPP---------VFNRGVS--------------------
        MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPP         VF+  +S                    
Subjt:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPP---------VFNRGVS--------------------

Query:  ------RGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
              RGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
Subjt:  ------RGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

KAG7010620.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-82100Show/hide
Query:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSRGVVAPRGSAAATAGLRRRRLGSTSAAGS
        MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSRGVVAPRGSAAATAGLRRRRLGSTSAAGS
Subjt:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSRGVVAPRGSAAATAGLRRRRLGSTSAAGS

Query:  TGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        TGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
Subjt:  TGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]1.9e-3086.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

XP_023512260.1 syntaxin-71-like [Cucurbita pepo subsp. pepo]3.4e-3298.61Show/hide
Query:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSR
        MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVS+
Subjt:  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSR

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]1.4e-3088.04Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRR GSTSAA STGLVGGGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta1.6e-3086.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRR GSTSA+ STGLVGGGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

A0A1S3CKE5 Protein transport protein Sec61 subunit beta2.0e-3086.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRR GSTSA  STGLVGGGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

A0A5D3CTD4 Protein transport protein Sec61 subunit beta2.0e-3086.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRR GSTSA  STGLVGGGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

A0A6J1H102 Protein transport protein Sec61 subunit beta9.1e-3186.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

A0A6J1JZ65 Protein transport protein Sec61 subunit beta9.1e-3186.96Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV
        GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta5.4e-0439.02Show/hide
Query:  SAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNN-------MLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGK
        S A+T   R  R  S +  G+ G +      G GG+         + FYTD  PG K+SP VV+ +S+ FI F+T+LHV GK
Subjt:  SAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNN-------MLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGK

P38389 Protein transport protein Sec61 subunit beta1.5e-1465.82Show/hide
Query:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL++SI FI F+ VLHV GKLY
Subjt:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY

P60467 Protein transport protein Sec61 subunit beta9.2e-0435.16Show/hide
Query:  PRGSAAATAGLRRRRLGSTSAAGST---------GLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA
        P G+   ++G    +  +  AAGST         G    G +   G   M RFYT+ +PGLK+ P  VLV+S+ FI  + +LH++GK  R+
Subjt:  PRGSAAATAGLRRRRLGSTSAAGST---------GLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA

P60468 Protein transport protein Sec61 subunit beta9.2e-0435.16Show/hide
Query:  PRGSAAATAGLRRRRLGSTSAAGST---------GLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA
        P G+   ++G    +  +  AAGST         G    G +   G   M RFYT+ +PGLK+ P  VLV+S+ FI  + +LH++GK  R+
Subjt:  PRGSAAATAGLRRRRLGSTSAAGST---------GLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA

Q54YR4 Protein transport protein Sec61 subunit beta1.5e-0650Show/hide
Query:  GGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA
        GGN+M++FY++ A GLK+ PT VL +S+ FI F+ +LH+ GK  R+
Subjt:  GGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.1e-1565.82Show/hide
Query:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL++SI FI F+ VLHV GKLY
Subjt:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.1e-1565.82Show/hide
Query:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY
        RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL++SI FI F+ VLHV GKLY
Subjt:  RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLY

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein2.2e-1656.82Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARS
        G    RGSAAATA +RRR+             GG SS GGG   ML+FYTD APGLKISP VVL++SI FI F+ VLHV GKLY  +S
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARS

AT3G60540.2 Preprotein translocase Sec, Sec61-beta subunit protein2.2e-1656.82Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARS
        G    RGSAAATA +RRR+             GG SS GGG   ML+FYTD APGLKISP VVL++SI FI F+ VLHV GKLY  +S
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARS

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein4.8e-2466.67Show/hide
Query:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAA
        G+ APRGSAAATAG+RRRRLG      S    GGGS  G G +NMLRFYTD APGLKISPTVVL++S+CFI F+T LHVFGKLY  +S +
Subjt:  GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGGAGACGGCTGTGGGGGCGATTCTCGGCAGGCTAGGGCGCCACTGCTATGCGGTTTTGTGTTTAGGAGTGCTTCTTCTGACGGTTGCCGTCGTTCACTACGT
CGGCGATGGAGAACCGACCGATCCTCGCGAGCGAAGCAAGCGCCGTCTTCGCACCTTGCATGGCGGCCGTGATCCGCCTCCGGTTTTCAATCGCGGTGTGTCACGTGGCG
TCGTCGCTCCTCGCGGCTCTGCGGCCGCGACGGCTGGCCTTCGACGTCGCCGTCTCGGCTCCACTTCTGCTGCCGGCTCTACTGGACTCGTTGGCGGTGGATCAAGCGGC
GGCGGCGGCGGCAACAACATGTTGAGGTTCTACACCGATGTTGCTCCAGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTTTTGAGCATCTGCTTCATCGATTTCATCAC
CGTCCTCCACGTCTTTGGTAAGCTCTACCGCGCGAGATCCGCGGCTGGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGGAGACGGCTGTGGGGGCGATTCTCGGCAGGCTAGGGCGCCACTGCTATGCGGTTTTGTGTTTAGGAGTGCTTCTTCTGACGGTTGCCGTCGTTCACTACGT
CGGCGATGGAGAACCGACCGATCCTCGCGAGCGAAGCAAGCGCCGTCTTCGCACCTTGCATGGCGGCCGTGATCCGCCTCCGGTTTTCAATCGCGGTGTGTCACGTGGCG
TCGTCGCTCCTCGCGGCTCTGCGGCCGCGACGGCTGGCCTTCGACGTCGCCGTCTCGGCTCCACTTCTGCTGCCGGCTCTACTGGACTCGTTGGCGGTGGATCAAGCGGC
GGCGGCGGCGGCAACAACATGTTGAGGTTCTACACCGATGTTGCTCCAGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTTTTGAGCATCTGCTTCATCGATTTCATCAC
CGTCCTCCACGTCTTTGGTAAGCTCTACCGCGCGAGATCCGCGGCTGGAGTTTAA
Protein sequenceShow/hide protein sequence
MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPVFNRGVSRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSG
GGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV