; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg03262 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg03262
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptiontRNA-intron lyase
Genome locationCarg_Chr20:2287744..2288463
RNA-Seq ExpressionCarg03262
SyntenyCarg03262
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570759.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. sororia]7.0e-13599.58Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGKASEARALADPMSKIVLQLQ SLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

KAG7010605.1 tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-135100Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

XP_022944534.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita moschata]1.4e-135100Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

XP_022985538.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima]6.1e-13196.65Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        M PRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITA+ DKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKS+KATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNG+GSVSPSCLD++SIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

XP_023512007.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo]1.5e-13298.33Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        M PRWKGKASEARALADPMSKIVLQLQS LTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKS+KATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG GSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

TrEMBL top hitse value%identityAlignment
A0A6J1CYW3 tRNA-intron lyase1.2e-11988.75Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQTDL NRACFGR I+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQD 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENVRLRVWSDFLCTIRLCGSVAKTLLVL
        EKN ++LW+ MKS+KATFPEFY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNEN RLRVWSDFLCTIRLCGSVAKTLLVL
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        SVN+NGS SVSPS LD+YSIEERTVTRWSPEQCRENP KV
Subjt:  SVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

A0A6J1FWV5 tRNA-intron lyase6.8e-136100Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

A0A6J1G6W2 tRNA-intron lyase1.3e-11888.56Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGK SEA+ALADP+SKIVLQLQSSLTQSDAQGLLS CS+LYQADEEQ +LLNRACFGR I++AEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQD 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKN  ELW  MKS+KATFPEFY AYQ+LRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG GSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENP
        VN NG+ SVSPSCLD+YSIEERTVTRWSPEQCRENP
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENP

A0A6J1G716 tRNA-intron lyase1.3e-11888.56Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        MGPRWKGK SEA+ALADP+SKIVLQLQSSLTQSDAQGLLS CS+LYQADEEQ +LLNRACFGR I++AEKDKQWFQFGMEEAFYLSY+LNCLKIVDGQD 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKN  ELW  MKS+KATFPEFY AYQ+LRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG GSNEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENP
        VN NG+ SVSPSCLD+YSIEERTVTRWSPEQCRENP
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENP

A0A6J1JBL2 tRNA-intron lyase3.0e-13196.65Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
        M PRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITA+ DKQWFQFGMEEAFYLSYHLNCLKIVDGQDR
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDR

Query:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS
        EKNVQELWQDMKS+KATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWSDFLCTIRLCGSVAKTLLVLS
Subjt:  EKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLS

Query:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
        VNDNG+GSVSPSCLD++SIEERTVTRWSPEQCRENPEKV
Subjt:  VNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

SwissProt top hitse value%identityAlignment
Q5M954 tRNA-splicing endonuclease subunit Sen24.0e-1627.33Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLV-LSEGGGSN
        ++ Q  +EEAF+L+Y L CL I   +     + +LWQ   + + TF   YMAY + R K W+ + G +YG D + YR  P   H+ ++V++ L +     
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLV-LSEGGGSN

Query:  ENVRLRVWSDFLCTIRLCGSVAKTL----LVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
           R   W       R+ G+V+K L    L+           +P C+    ++E  ++RW   + R + +++
Subjt:  ENVRLRVWSDFLCTIRLCGSVAKTL----LVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen26.5e-5949.79Show/hide
Query:  GPRWK----GKASEARALADPMSKIVLQLQSSLTQSDAQGLLS--GCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIV
        GPRWK    GK   + A A+PMS IV +L++S   S    +LS  G S +     EQ  +LNRA FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  GPRWK----GKASEARALADPMSKIVLQLQSSLTQSDAQGLLS--GCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIV

Query:  DGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENVRLRVWSDFLCTIRLCGSVAK
           +++ +  ELW   +S   +FPE Y AY HLR+KNW+VR G QYG DFVAYRHHPALVHSEFAV+V+ EG    N   RL VWSD LC +R  GSVAK
Subjt:  DGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENVRLRVWSDFLCTIRLCGSVAK

Query:  TLLVLSVNDNGSGSV-SPSCLDNYSIEERTVTRWSPEQCRE
        TLLVL+++ +    + SP CL+   + ERT+TRW  +QCRE
Subjt:  TLLVLSVNDNGSGSV-SPSCLDNYSIEERTVTRWSPEQCRE

Q6P7W5 tRNA-splicing endonuclease subunit Sen23.1e-1627.33Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLV-LSEGGGSN
        ++ Q  +EEAF+L+Y L CL I   +     + +LWQ   + + TF   YMAY + R K W+ + G +YG D + YR  P   H+ ++V++ L +     
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLV-LSEGGGSN

Query:  ENVRLRVWSDFLCTIRLCGSVAKTL----LVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV
           R   W       R+ G+V+K L    L+           +P C+    ++E  ++RW   + R + +++
Subjt:  ENVRLRVWSDFLCTIRLCGSVAKTL----LVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-21.7e-6753.36Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +LQ SL ++++ G LS C++L   + EQ +LL+R CFGR +++AEK K+W Q   EEAF+L Y+L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V + W  MKS++  FP F+ AY HLR KNW++R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN
         VN N  G       CL+N+++EE+T++RWSPE  RE+
Subjt:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-16.3e-7056.3Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +L+SSLTQ++A G LS C++L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNWIVR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN
         VN   N      P CL++Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases5.7e-1845.92Show/hide
Query:  AQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKN
        A G LS C++      EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI        N  +LW+ ++S K  F   Y AY HLR KN
Subjt:  AQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPEFYMAYQHLRMKN

AT3G45590.1 splicing endonuclease 14.5e-7156.3Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +L+SSLTQ++A G LS C++L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNWIVR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN
         VN   N      P CL++Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN

AT3G45590.2 splicing endonuclease 14.5e-7156.3Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +L+SSLTQ++A G LS C++L   + E+ +LL+R CFGR ++ AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V +LW+ M S K  F   Y AY HLR KNWIVR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN
         VN   N      P CL++Y++EE+T+ RWSPE  RE+
Subjt:  SVND--NGSGSVSPSCLDNYSIEERTVTRWSPEQCREN

AT5G60230.1 splicing endonuclease 21.2e-6853.36Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +LQ SL ++++ G LS C++L   + EQ +LL+R CFGR +++AEK K+W Q   EEAF+L Y+L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V + W  MKS++  FP F+ AY HLR KNW++R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN
         VN N  G       CL+N+++EE+T++RWSPE  RE+
Subjt:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 21.2e-6853.36Show/hide
Query:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        M PRWK K +EA+ALA+P+SK V +LQ SL ++++ G LS C++L   + EQ +LL+R CFGR +++AEK K+W Q   EEAF+L Y+L C+KI + G+ 
Subjt:  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL
         E  V + W  MKS++  FP F+ AY HLR KNW++R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWSD  C +RL GSVAKTLL L
Subjt:  REKNVQELWQDMKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN
         VN N  G       CL+N+++EE+T++RWSPE  RE+
Subjt:  SVNDNGSGSVSP--SCLDNYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAGAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCGCAAGG
ATTATTATCTGGTTGTAGTATACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCGCTTGTTTCGGCCGAACAATTATTACCGCCGAGAAGGATAAGCAAT
GGTTTCAATTCGGAATGGAGGAGGCTTTTTACTTGTCCTATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGATCGTGAAAAGAATGTTCAAGAGCTGTGGCAGGAT
ATGAAGTCGCGAAAGGCTACATTCCCTGAGTTTTACATGGCTTATCAACATCTTCGAATGAAGAATTGGATTGTGCGACCTGGATCTCAATATGGCGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGTGCGATTAAGAGTTTGGTCTGATTTTTTAT
GCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATGATAATGGAAGCGGCTCTGTTTCTCCTTCTTGTTTGGACAATTACTCCATTGAA
GAGCGCACAGTTACAAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGAAAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAGAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCGCAAGG
ATTATTATCTGGTTGTAGTATACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCGCTTGTTTCGGCCGAACAATTATTACCGCCGAGAAGGATAAGCAAT
GGTTTCAATTCGGAATGGAGGAGGCTTTTTACTTGTCCTATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGATCGTGAAAAGAATGTTCAAGAGCTGTGGCAGGAT
ATGAAGTCGCGAAAGGCTACATTCCCTGAGTTTTACATGGCTTATCAACATCTTCGAATGAAGAATTGGATTGTGCGACCTGGATCTCAATATGGCGTTGATTTTGTGGC
TTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGTGCGATTAAGAGTTTGGTCTGATTTTTTAT
GCACAATTCGGCTTTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATGATAATGGAAGCGGCTCTGTTTCTCCTTCTTGTTTGGACAATTACTCCATTGAA
GAGCGCACAGTTACAAGATGGAGTCCAGAACAGTGCCGCGAAAATCCTGAAAAAGTGTGA
Protein sequenceShow/hide protein sequence
MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRACFGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQD
MKSRKATFPEFYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWSDFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIE
ERTVTRWSPEQCRENPEKV